Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08815 ATGAGTGGAAGAAATAATAATGGATTTGATTGGGCCAAGGGTAAGATTGTTGGAAGTGGATCTTTTGGCAGTGTTCATATAGCCATGGACAAATCAACCGGTGGACTTTTCGTAGCGAAAACGGCGGAATCTGATGCAGGACAGGAAGCTCTCCAGAATGAGGTGGATATTCTAAATACATTGAAGAATTCATCATCCTCGTCGTCGCAGTCACCGTCGCCGTATATTATACAATGTTTAGGGACAGAATATGATCATCTAGATAATAATAGGCTGCATGTTTTCATGGAGTATATGGCTGGAGGTAGTTTGGCTGACACGTTACTCAAGTTTGGTGGTTCGTTCGATGAACATGTTGTTCGATTGTATACTAGACAGATTTTGCTTGGGTTATATCATCTTCACCAACATGAAATTGTGCATTGTGACCTCAAATGCAAAAATGTGCTTTTGGCCTCGTCTGGGACGGTTAAGCTCGCAGATTTCGGATGTGCGAAAAAGATCAGCAAGGACTCGAACATGAACAAATCATCGTCGTCTGTTGTTAATAACGGGGGCACTCCTCTATGGATGGCTCCTGAAGTATTATTATCGAGGAATGCTAAAGACGAGAGGGTTGTTGATTTTGCAGCAGCAGATATATGGTCTTTGGGATGTACTGTTATTGAAATGGCCACTGGTAGGCCTCCTTGGGTTCATGATGACCTTGTTTCGATTTCAAATCCAATGTCTGCTATGTTTAAGATTGTCTGTGGTGACGCGATACCTCAATTTCCAAGTCATTTCTCTCAGGAGGGTTTCGATTTCTTGAGAAGATGTTTGGTGAGAGATCCGAGTAAGAGGTCTACCGCGAAGGACTTGCTTAACCATCCATTCCTTGTTGCAAATACTTTAACTTATCAAAAACTCTACTCTAATTCGTCACCAGCAGCTGTCTTGGACGTTCATCAATTTGAGGATGATTATGATGATGACGACGATGAATCAGATAATTATGATGATGAGTTGCTAAGTCCAGCAGGGAGGAATCGTTTCTCCATCGGAAATGAGTTTGCGTGCCCACAAGGAAAAACAATATGGCAACAGGAAGACAGTGCATCAGGGAATCATTGGATTACCATTAGATCAAGGTGA 1134 0.4215 MSGRNNNGFDWAKGKIVGSGSFGSVHIAMDKSTGGLFVAKTAESDAGQEALQNEVDILNTLKNSSSSSSQSPSPYIIQCLGTEYDHLDNNRLHVFMEYMAGGSLADTLLKFGGSFDEHVVRLYTRQILLGLYHLHQHEIVHCDLKCKNVLLASSGTVKLADFGCAKKISKDSNMNKSSSSVVNNGGTPLWMAPEVLLSRNAKDERVVDFAAADIWSLGCTVIEMATGRPPWVHDDLVSISNPMSAMFKIVCGDAIPQFPSHFSQEGFDFLRRCLVRDPSKRSTAKDLLNHPFLVANTLTYQKLYSNSSPAAVLDVHQFEDDYDDDDDESDNYDDELLSPAGRNRFSIGNEFACPQGKTIWQQEDSASGNHWITIRSR 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08815 377 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 11 376 - -
Vivi1g08815 377 ProSitePatterns Protein kinases ATP-binding region signature. 17 40 IPR017441 GO:0005524
Vivi1g08815 377 Pfam Protein kinase domain 13 293 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g08815 377 CDD STKc_MAPKKK 10 293 - -
Vivi1g08815 377 SUPERFAMILY Protein kinase-like (PK-like) 10 303 IPR011009 -
Vivi1g08815 377 ProSitePatterns Serine/Threonine protein kinases active-site signature. 139 151 IPR008271 GO:0004672|GO:0006468
Vivi1g08815 377 Gene3D Transferase(Phosphotransferase) domain 1 9 338 - -
Vivi1g08815 377 ProSiteProfiles Protein kinase domain profile. 11 293 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g08815 377 SMART serkin_6 11 293 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08815 Vivi-Chr1 251897036 251898727 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08815 7 297 MAP Kinase Kinase Kinase AT1G53570 39.799 7.67e-61 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vivi1g08815 Pkinase 1.5e-57 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08815 K20716 - psat:127086258 607.831