Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08813 ATGGCTTCCAATCAAATGTCAGCTACAACCCCTGCAGGGGCAACGAATGATGCTTTATACAAGGAATTGTGGCATGCGTGTGCTGGACCGCTTGTCACTCTTCCTCGTGAAGGGGAGAGAGTTTATTACTTCCCTCAAGGTCACATGGAACAGCTTGAGGCGTCTATGAATCAGGGATTAGAGCAGCAAATGCCTTCCTTTAATCTTCCTTCTAAAATATTATGTAAAGTGGTCAATATTCATCTCCGGGCTGAACCTGAAACAGATGAAGTATATGCACAAATAACTTTGCTACCTGAATCCGATCAAAGTGAGGTGACAAGCCCAGATGATCCTCTGCCCGAACCTCCAAGGTGTACAGTTCATTCATTTTGCAAGACACTTACTGCTTCTGACACTAGCACTCATGGAGGTTTCTCTGTTCTTCGAAGACATGCGGATGATTGTCTACCACCACTGGACATGACTCAGCAGCCACCATGGCAAGAATTGGTTGCAACTGATTTGCATGGGAATGAATGGCATTTTCGACATATTTTTCGTGGGCAACCCAGGCGCCACTTACTGACCACTGGATGGAGTGTCTTTGTTAGTTCCAAGAAATTAGTAGCTGGAGACGCATTTATATTCTTAAGGGGTGAAAATGGAGAACTCCGAGTTGGAGTCAGGAGGCTCATGAGACAGCAAAGCAATATGCCATCTTCTGTTATATCTAGTCACAGCATGCATCTTGGTGTTCTGGCCACTGCATCTCACGCCATTTCCACTGGAACATTGTTTTCTGTGTTTTATAAGCCCAGAACAAGCCGGTCAGAGTTTATTGTGAGTATTAACAAATATCTCGAAGCTCGAAATCATAAACTTTCTGTTGGGATGCGATTCAAAATGAGGTTCGAGGGTGATGAAGTACCTGAACGAAGGTTTAGCGGTACAATTGTAGGTGTAGAAGATAATAAATCATCCATCTGGGCTAATTCTGAGTGGCGATCATTAAAGGTTCAATGGGATGAACCATCATCAATTTTGCGTCCGGATAGAGTTTCTCCATGGGAATTAGAGCCACTTTTGTCTACCCCTTCTGCAAACTCCCAGCCAGCTCAACGAAACAAGAGATCACGCCCCCCTGTTCTACCTTCCACAATGCCCGATTCTTCTTTGCAAGGTATATGGAAATCACCAGTTGAATCTCCACCATTCCCTTATCGTGACTCTCAACATACTCGAGACCTCTATCCATCCCCAAGATTCAGCTCTACTGCGACTAGCTTTCTTGGCTTTGGTGGGAACAGTCCTGCTTCTAACAAGTCAATATATTGGTCTAATAGATTGGAAAACCCTACAGAACCTTTTTCACCTATATCACTTAAAGAACCCGGAGAAAAGAGACAGGGCATTGGAAGTGGCTGTAGGCTCTTTGGGATTCAGTTACTTGAGAATTCTAATGCAGAAGAAAGTCTGCAAGCAGCTTCTTTGTCAAGAAGGGTTGGTGATGATGAGTCTGACCAACATTCTGAACCATCAAATGTTAATCGGTCTGATATTCCTTCAGTAAGTTGTGATGCTGACAAATCATGCCTACGGTCTCCTCAGGAGTCGCAAAGCAGACAAATAAGAAGTTGCACAAAGGTTCACATGCAAGGTATGGCTGTTGGAAGGGCTGTGGATTTAACACGTTTTGATGGATATGAGGATCTGCTTAGGAAATTGGAAGAGATGTTTGACATTGAGGGTGAGCTCTGTGGACCAACAAAAAAATGGCTAGTTGTTTACACCGACAATGAAGATGATAGGATGATGGTCGGGGATGATCCATGGCTTGAATTTTGTAACGTTGTGAGGAAAATTTTCATCTACACACCAGAAGAGGTGAAGAAGCTTTCACCCAAAATAGGTCTTCTGATCAATGAAGAAGGTAAACCAAGCAAACTGGATTCCGAAGCAGTTGTCAATCCGGAGGACCAGTCATCTATTGTGGGGCCTGGTTGCTAA 1989 0.4389 MASNQMSATTPAGATNDALYKELWHACAGPLVTLPREGERVYYFPQGHMEQLEASMNQGLEQQMPSFNLPSKILCKVVNIHLRAEPETDEVYAQITLLPESDQSEVTSPDDPLPEPPRCTVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMTQQPPWQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQQSNMPSSVISSHSMHLGVLATASHAISTGTLFSVFYKPRTSRSEFIVSINKYLEARNHKLSVGMRFKMRFEGDEVPERRFSGTIVGVEDNKSSIWANSEWRSLKVQWDEPSSILRPDRVSPWELEPLLSTPSANSQPAQRNKRSRPPVLPSTMPDSSLQGIWKSPVESPPFPYRDSQHTRDLYPSPRFSSTATSFLGFGGNSPASNKSIYWSNRLENPTEPFSPISLKEPGEKRQGIGSGCRLFGIQLLENSNAEESLQAASLSRRVGDDESDQHSEPSNVNRSDIPSVSCDADKSCLRSPQESQSRQIRSCTKVHMQGMAVGRAVDLTRFDGYEDLLRKLEEMFDIEGELCGPTKKWLVVYTDNEDDRMMVGDDPWLEFCNVVRKIFIYTPEEVKKLSPKIGLLINEEGKPSKLDSEAVVNPEDQSSIVGPGC 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08813 662 Gene3D - 533 627 - -
Vivi1g08813 662 MobiDBLite consensus disorder prediction 355 391 - -
Vivi1g08813 662 FunFam Auxin response factor 122 226 - -
Vivi1g08813 662 SMART B3_2 124 226 IPR003340 GO:0003677
Vivi1g08813 662 FunFam Auxin response factor 533 627 - -
Vivi1g08813 662 MobiDBLite consensus disorder prediction 355 408 - -
Vivi1g08813 662 SUPERFAMILY DNA-binding pseudobarrel domain 113 253 IPR015300 -
Vivi1g08813 662 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 18 627 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vivi1g08813 662 Coils Coil 474 494 - -
Vivi1g08813 662 ProSiteProfiles B3 DNA-binding domain profile. 124 226 IPR003340 GO:0003677
Vivi1g08813 662 ProSiteProfiles PB1 domain profile. 538 631 IPR000270 GO:0005515
Vivi1g08813 662 MobiDBLite consensus disorder prediction 488 527 - -
Vivi1g08813 662 Pfam AUX/IAA family 535 628 IPR033389 -
Vivi1g08813 662 CDD B3_DNA 122 224 IPR003340 GO:0003677
Vivi1g08813 662 MobiDBLite consensus disorder prediction 643 662 - -
Vivi1g08813 662 Gene3D - 287 360 - -
Vivi1g08813 662 Gene3D - 121 226 IPR015300 -
Vivi1g08813 662 FunFam Auxin response factor 287 359 - -
Vivi1g08813 662 Pfam Auxin response factor 250 332 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vivi1g08813 662 SUPERFAMILY CAD & PB1 domains 540 615 - -
Vivi1g08813 662 Pfam B3 DNA binding domain 124 224 IPR003340 GO:0003677
Vivi1g08813 662 MobiDBLite consensus disorder prediction 507 527 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08813 Vivi-Chr1 251870980 251877656 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08813 1 656 B3 DNA Binding Superfamily AT1G59750 70.659 0.0 936
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vivi1g08813 AUX_IAA 5e-11 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08813 K14486 - gmx:100793224 1203.73