Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08793 ATGGAGATCAATATTAGTTCATATGATTCTTCTAACTTGAGCAGCAAGCAACATCATGATGTTAAAGAGGACTATACATCATCTTCATCATTCAATCTAACCAATGTTTCAAAGCTCATTCTTCCACCACTTGGTGTTCCTAAAGAGACTCAAGTTTACTCTAAATGGATCATTTCACCAATGGATTCAAGATATAGGTGGTGGGAGAGTTTTATGGTGGTGTTGGTAGCATATACTGCATGGGTTTATCCATTTGAAGTTGCATTCATGCATTCTTCAAATAGGGAGCTATATATTGTGGACAATATTGTTGATCTTTTCTTTGCTATTGATATTGTGATGACATTCTTTGTGGCATTCATTGATGGAACTACTCATCTACTTGTTAGAGATTCCAAAAAAATTGCTGTTAGGTACTTGTCATCATGGTTCATAATGGATGTGGCATCAACAATACCCTATGAAGCAATAGGCTACATTGGCAATCACAAATTGAGTCTTCCTTTCTTTCTCTTGGGAATGCTCAGATTTTGGAGAATCAGACGTGTCAAACAATTCTTCACAAGGCTTGAGAAAGACATCAGATTCAGCTATTTCTGGGTCAGATGTGCTAGGCTTCTTTCTGTAACACTCTTTTCAGTTCATTGTGCTGGTTGTCTCTATTACATGCTAGCTGATAGGTACCCTCATAAAGGTAAAACATGGATTGGAGCTGTCATTCCAAATTTCAAAGAGACAAGTCCTAGAACAAGATACATTTCAGCCATATACTGGTCCATCACCACCATGACAACCGTCGGTTATGGCGATCTTCATGCTGTCAACACCATGGAAATGATTTTCATTATTTTTTATATGCTCTTCAACCTCGGCCTAACCGCTTACTTAATCGGTAACATGACGAATCTTGTAGTTGAAGGAACTCGCCGCACAATGGAATTCAGAAATAGCATTGAAGCAGCATCGAACTTTGTGTACCGAAATCGCTTGCCACCGAGGCTAAAAGATCAAATCCTTGCTTACATGTGTTTGAGATTTAAGGCGGAAAGTTTGAATCAACATCAGTTAATTGAACAACTGCCAAAGTCAATTTGCAAAAGCATTTGCCAGCATTTGTTTTTTCCAACTGTAGAGAAAGTCTATCTCTTCAAAGGCGTCTCGAAAGAAATCCTTTTGTCCCTCGTTGCGAAAATGAATGCGGAATACATACCACCGAAAGAGGATGTTATAACGCAAAACGAAGCGCCGGATGATGTTTACATTATAGTGTCAGGAGAAGTAGAGATCATAGATAGTGTGATAGAGAAAGAGAGAGTTTTAGGGACTCTAACAACAGGTGAAATGTTTGGAGAAGTTGGTGCACTTTGTTGTAGGTCTCAGAGCTATACATATAGAACCAAGACATTCACAGAGATTCTGAGGTTGAAAACTAGTGCTCTTGTAGAAGAAATGCATAGTAAAAAAGAAGATAATATACTAATACTCAAAAATTTCCTTCAGCATTATAAGGAGCTTAAGAATTTGAGTGTCAAAGATGTAATGTTGGAGAATGTTGAAGAAGAAGATCCTAACATGTCTGTGAATTTGTTAACTGTGGCTAGCACTGGTAATGCTGCTTTTCTTGAGGAGCTTCTTGGTGCTGGTTTGGATCCTGATATTGGTGACTCTAAAGGAAAAACTCCATTGCACATAGCAGCATCAAATGGACATAAAGAGTGTGTTAAAGTCTTGCTCAAACATACATGCAATATACATATAAAAGTATGGTATGCAATAGCTTCAAAGCATTACTCAATCTTCAGAATCCTCTATCAGCTATCTGCACTCTCTGATCCATACACGGCTGGAAATCTCCTATGTCTAGCAGCAAAAAGAAACGATTTAACCGTGATGAACGAGCTTCTAAAGCAAGGACTAAACATCGACTCAAAAGATGGACACGACACGAAGGCTATACAAATTGCTATAACAGAAAATCTTGTTGACATGGTTCAGCTGCTTGTTATGAACGGCGCAGAAGTTGATGATATACATATCCATGAATTTTCTGCATCCACCTTAAATGAATTATTGCAGAAACGCGAAATCGGGCATTTAATTAATGTGAATGAGGCAATGCATAGTGAGTTTGTATTAAAGGGTGAAAATCAAGAAGATCAGAAACAAATTAAGGAAAGATATAATGGACTAGAGTGTCCAAGAGTAAGCATATATAGAGGTCACCCAATAGTGAGAAGAGAAAAAGGTTTCATTGAAGCCGGAAAGTTAATAAAGTTGCCGGATTCATTAGAAAAGCTCAAAATTATTGCAGGTGAAAAATTTGAGTTTGATGCAAGAGATGCAAAGGTGACAAATGAAGAAGGAGTAGAAATTAACAGTATTGATGTGATAAGAGATAATGATAAACTGTTTATTGTTGAATAG 2424 0.3746 MEINISSYDSSNLSSKQHHDVKEDYTSSSSFNLTNVSKLILPPLGVPKETQVYSKWIISPMDSRYRWWESFMVVLVAYTAWVYPFEVAFMHSSNRELYIVDNIVDLFFAIDIVMTFFVAFIDGTTHLLVRDSKKIAVRYLSSWFIMDVASTIPYEAIGYIGNHKLSLPFFLLGMLRFWRIRRVKQFFTRLEKDIRFSYFWVRCARLLSVTLFSVHCAGCLYYMLADRYPHKGKTWIGAVIPNFKETSPRTRYISAIYWSITTMTTVGYGDLHAVNTMEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVYRNRLPPRLKDQILAYMCLRFKAESLNQHQLIEQLPKSICKSICQHLFFPTVEKVYLFKGVSKEILLSLVAKMNAEYIPPKEDVITQNEAPDDVYIIVSGEVEIIDSVIEKERVLGTLTTGEMFGEVGALCCRSQSYTYRTKTFTEILRLKTSALVEEMHSKKEDNILILKNFLQHYKELKNLSVKDVMLENVEEEDPNMSVNLLTVASTGNAAFLEELLGAGLDPDIGDSKGKTPLHIAASNGHKECVKVLLKHTCNIHIKVWYAIASKHYSIFRILYQLSALSDPYTAGNLLCLAAKRNDLTVMNELLKQGLNIDSKDGHDTKAIQIAITENLVDMVQLLVMNGAEVDDIHIHEFSASTLNELLQKREIGHLINVNEAMHSEFVLKGENQEDQKQIKERYNGLECPRVSIYRGHPIVRREKGFIEAGKLIKLPDSLEKLKIIAGEKFEFDARDAKVTNEEGVEINSIDVIRDNDKLFIVE 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08793 807 CDD CAP_ED 382 485 IPR000595 -
Vivi1g08793 807 PRINTS EAG/ELK/ERG potassium channel family signature 101 111 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vivi1g08793 807 PRINTS EAG/ELK/ERG potassium channel family signature 112 121 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vivi1g08793 807 PRINTS EAG/ELK/ERG potassium channel family signature 296 305 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vivi1g08793 807 PRINTS EAG/ELK/ERG potassium channel family signature 78 85 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vivi1g08793 807 PRINTS EAG/ELK/ERG potassium channel family signature 278 289 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vivi1g08793 807 PRINTS EAG/ELK/ERG potassium channel family signature 252 269 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vivi1g08793 807 SMART cnmp_10 382 499 IPR000595 -
Vivi1g08793 807 FunFam Potassium channel KAT3 67 306 - -
Vivi1g08793 807 Pfam Cyclic nucleotide-binding domain 402 483 IPR000595 -
Vivi1g08793 807 SUPERFAMILY Ankyrin repeat 518 684 IPR036770 -
Vivi1g08793 807 ProSiteProfiles Ankyrin repeat region circular profile. 557 587 - -
Vivi1g08793 807 Gene3D Jelly Rolls 350 524 IPR014710 -
Vivi1g08793 807 SMART ANK_2a 557 586 IPR002110 GO:0005515
Vivi1g08793 807 SMART ANK_2a 647 676 IPR002110 GO:0005515
Vivi1g08793 807 SMART ANK_2a 524 553 IPR002110 GO:0005515
Vivi1g08793 807 SMART ANK_2a 614 643 IPR002110 GO:0005515
Vivi1g08793 807 Gene3D - 525 700 IPR036770 -
Vivi1g08793 807 SUPERFAMILY Voltage-gated potassium channels 60 305 - -
Vivi1g08793 807 ProSiteProfiles cAMP/cGMP binding motif profile. 382 501 IPR000595 -
Vivi1g08793 807 ProSiteProfiles KHA domain profile. 734 807 IPR021789 -
Vivi1g08793 807 Pfam KHA, dimerisation domain of potassium ion channel 733 805 IPR021789 -
Vivi1g08793 807 Gene3D - 68 305 - -
Vivi1g08793 807 PRINTS Ankyrin repeat signature 558 573 IPR002110 GO:0005515
Vivi1g08793 807 PRINTS Ankyrin repeat signature 663 677 IPR002110 GO:0005515
Vivi1g08793 807 PANTHER POTASSIUM CHANNEL AKT1 32 806 IPR045319 GO:0005249|GO:0006813
Vivi1g08793 807 ProSiteProfiles Ankyrin repeat profile. 557 589 IPR002110 GO:0005515
Vivi1g08793 807 FunFam Potassium channel KAT2 370 506 - -
Vivi1g08793 807 Pfam Ankyrin repeats (3 copies) 529 587 IPR002110 GO:0005515
Vivi1g08793 807 Pfam Ion transport protein 65 311 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vivi1g08793 807 SUPERFAMILY cAMP-binding domain-like 309 500 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08793 Vivi-Chr1 251581279 251588012 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08793 10 562 Ion Channels AT4G22200 71.076 0.0 822
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08793 K21867 - gmx:100798422 1276.54