Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08792 ATGGAGAACAATTTCAGTTCATATAATTCTTCTAGTTTGAACAAAAAACATCATCATCATCATCATCATACATCATCTTCATCATTCAATCTAAGGAATGTTTCAAAACTCATTCTTCCACCACTTGGTGCTCCTAAAGAGAATCAAGTTTACTCTAAATGGATCATTTCACCAATGGATTCTAGATACAGGTGTTGGGAGAGTTTTATGGTTGTTTTGGTAGCTTATTCTGCATGGGTTTATCCCTTTGAAGTTGCTTTCATGCATTCTTCTCCAAATAGAAAACTCTATATTGTGGACAATATTGTTGATTTTTTCTTCGCCATTGATATTGTCATGACATTCTTTGTGGCATTCATTGATGGAACTACTCATCTTCTAGTCAGAGATTCCAAAAAAATTGTTGTCAGGTACTTGTCAACATGGTTCATAATGGATGTGGCATCAACAATACCATATGAAGCAATAGGCTTCATTTTAACTGGCAAACACAAACTAGGCCTCCCTTACTTCCTCTTAGGAATGCTCAGATTTTGGAGAATCAGACGTGTCAAACAATTCTTCACAAGGCTTGAAAAAGACATCAGATTCAGCTATTTTTGGGTCAGATGTGCTAGGCTTCTTTCTGTCACACTTTTCTCAATCCATTGTGCTGGATGTCTCTATTACATGCTTGCTGATAGGTATCCTCATCAAGGCAATACATGGATTGGAGCTGTCATTCCAAATTTCAGAGAGACTAGTCCTAGAACTAGATACATTTCAGCCATATACTGGTCCATCACCACGATGACAACCGTTGGTTATGGCGATCTTCACGCTGTCAACACCATGGAAATGATTTTCATTATTTTTTATATGCTCTTCAATCTTGGACTAACCGCTTACTTAATCGGTAACATGACGAATCTTGTAGTTGAAGGAACTCGGCGCACAATGGAATTCAGAAATAGCATTGAAGCAGCATCGAACTTTGTGTGCCGAAATAGGCTGCCTCCGAGGCTAAAAGAACAAATCCTTGCTTACATGTGTTTAAGATTTAAGGCGGAGAGATTGAATCAACATCAGCTAATAGAACAGCTTCCGAAATCAATCTGCAAAAGCATTTGCCAGCATTTGTTTTTTCCAACTGTGGAGAAAGTTTATCTCTTCCAAGGCGTCTCGAAAGAGATCCTTTTGTCCTTAGTTGCGAAAATGAATGCGGAATACATACCGCCTAAAGAGGATGTTATAATGCAAAATGAAGCGCCGGACGATGTTTACATCATAGTGTCGGGAGAAGTAGAGATCATTGATAGTGTTATAGAGAAAGAGAGAGTTTTAGGGACTCTAACAGCAGGAGACATGTTTGGAGAAGTTGGTGCACTTTGTTGTAGGTCTCAAAGCTATACCTATAGAACCAAGACTCTTACACAGCTTCTGAGGTTGAAAACCAATGCTCTTATAGAAGCAATGCAGATAAAAAAAGAGGATAATATACTAATACTCAAAAATTTCCTTCAGCATTATAAGCAGCTTAAGGATTTGAGTATCAAAGATTTAATGGTGGAGAATGTTGAAGAAGAGGATCCTAACATGGCGGTGAATTTGTTAACTGTGGCTGGCACAGGTAATGCTGCTTTTCTTGAGGAGCTTCTAAGAGCTGGTTTGGATCCTGATATAGGTGACTCAAAAGGAAAAACTCCATTGCATATAGCAGCATCAAATGGACATGAAGAGTGTGTGAAAGCCTTGCTCAAACATACATGCAACATTCATATAAAAGATATGAATGGTAACACTGCACTATGGTATGCAATAGCCTCAAAGCATTACTCAATCTTCAGAATCCTCTATCAGCTATCTGCACTCTCCGATCCATACACGGCAGGGAATCTGCTATGTCTAGCAGCGAAAAGAAACGATATAACCGTGATGAACGAGCTTCTAAAGCAAGGACTAAACATCGACTCGAAAGATGGCCACGGAACAACGGCTATTCAAATTGCCATGACAGAAAATCTAGTTGACATGGTTCAGTTACTTGTCCTGAACGGCGCAGATGTTGCTAATATACATGTTCATGAATTTTCTGCATCCACCTTAAATGAAATGCTGCAGAAACGCGAAATCGGGCATTTAATTAATGTGACTGAGACAATGCCTAGTGGGTTTGTATTAAAAGATGAAAATGAAGAAGAACAGAAACAAGGTTGGAGAAGATATAATGGAGTAGAGTTTCCAAGAGTAAGTATATATAGAGGCCACCCTATAGTGAGAAGAGAAAAAGGTTTCGTTGAAGCCGGAAAGTTAATAAAGTTGCCTGATTCATTAGAAAAGCTCAAAATTATCGCAGGTGAAAAGTTTGAGTTTGATGCAAGAGATGCAATGGTGACAAATGAAGAAGGAGCAGAAATAGATAGTATAGATGTGATAAGAGATAATGATAAACTCTTTATTGTTGAATAG 2448 0.3836 MENNFSSYNSSSLNKKHHHHHHHTSSSSFNLRNVSKLILPPLGAPKENQVYSKWIISPMDSRYRCWESFMVVLVAYSAWVYPFEVAFMHSSPNRKLYIVDNIVDFFFAIDIVMTFFVAFIDGTTHLLVRDSKKIVVRYLSTWFIMDVASTIPYEAIGFILTGKHKLGLPYFLLGMLRFWRIRRVKQFFTRLEKDIRFSYFWVRCARLLSVTLFSIHCAGCLYYMLADRYPHQGNTWIGAVIPNFRETSPRTRYISAIYWSITTMTTVGYGDLHAVNTMEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVCRNRLPPRLKEQILAYMCLRFKAERLNQHQLIEQLPKSICKSICQHLFFPTVEKVYLFQGVSKEILLSLVAKMNAEYIPPKEDVIMQNEAPDDVYIIVSGEVEIIDSVIEKERVLGTLTAGDMFGEVGALCCRSQSYTYRTKTLTQLLRLKTNALIEAMQIKKEDNILILKNFLQHYKQLKDLSIKDLMVENVEEEDPNMAVNLLTVAGTGNAAFLEELLRAGLDPDIGDSKGKTPLHIAASNGHEECVKALLKHTCNIHIKDMNGNTALWYAIASKHYSIFRILYQLSALSDPYTAGNLLCLAAKRNDITVMNELLKQGLNIDSKDGHGTTAIQIAMTENLVDMVQLLVLNGADVANIHVHEFSASTLNEMLQKREIGHLINVTETMPSGFVLKDENEEEQKQGWRRYNGVEFPRVSIYRGHPIVRREKGFVEAGKLIKLPDSLEKLKIIAGEKFEFDARDAMVTNEEGAEIDSIDVIRDNDKLFIVE 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08792 815 Gene3D Jelly Rolls 351 525 IPR014710 -
Vivi1g08792 815 ProSiteProfiles Ankyrin repeat region circular profile. 655 682 - -
Vivi1g08792 815 SUPERFAMILY Ankyrin repeat 519 690 IPR036770 -
Vivi1g08792 815 ProSiteProfiles Ankyrin repeat region circular profile. 558 589 - -
Vivi1g08792 815 ProSiteProfiles cAMP/cGMP binding motif profile. 383 502 IPR000595 -
Vivi1g08792 815 SMART cnmp_10 383 500 IPR000595 -
Vivi1g08792 815 SUPERFAMILY cAMP-binding domain-like 310 501 IPR018490 -
Vivi1g08792 815 CDD CAP_ED 383 486 IPR000595 -
Vivi1g08792 815 PRINTS EAG/ELK/ERG potassium channel family signature 111 120 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vivi1g08792 815 PRINTS EAG/ELK/ERG potassium channel family signature 253 270 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vivi1g08792 815 PRINTS EAG/ELK/ERG potassium channel family signature 279 290 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vivi1g08792 815 PRINTS EAG/ELK/ERG potassium channel family signature 297 306 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vivi1g08792 815 PRINTS EAG/ELK/ERG potassium channel family signature 100 110 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vivi1g08792 815 SMART ANK_2a 655 684 IPR002110 GO:0005515
Vivi1g08792 815 SMART ANK_2a 591 621 IPR002110 GO:0005515
Vivi1g08792 815 SMART ANK_2a 558 587 IPR002110 GO:0005515
Vivi1g08792 815 SMART ANK_2a 622 651 IPR002110 GO:0005515
Vivi1g08792 815 SMART ANK_2a 525 554 IPR002110 GO:0005515
Vivi1g08792 815 MobiDBLite consensus disorder prediction 1 28 - -
Vivi1g08792 815 SUPERFAMILY Voltage-gated potassium channels 58 306 - -
Vivi1g08792 815 Gene3D - 64 306 - -
Vivi1g08792 815 PRINTS Ankyrin repeat signature 671 685 IPR002110 GO:0005515
Vivi1g08792 815 PRINTS Ankyrin repeat signature 559 574 IPR002110 GO:0005515
Vivi1g08792 815 FunFam Potassium channel KAT3 65 307 - -
Vivi1g08792 815 ProSiteProfiles KHA domain profile. 742 815 IPR021789 -
Vivi1g08792 815 Pfam Ankyrin repeats (3 copies) 536 612 IPR002110 GO:0005515
Vivi1g08792 815 PANTHER POTASSIUM CHANNEL AKT1 29 814 IPR045319 GO:0005249|GO:0006813
Vivi1g08792 815 Pfam KHA, dimerisation domain of potassium ion channel 741 813 IPR021789 -
Vivi1g08792 815 Pfam Ion transport protein 64 312 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vivi1g08792 815 Pfam Cyclic nucleotide-binding domain 403 486 IPR000595 -
Vivi1g08792 815 FunFam Potassium channel KAT2 371 507 - -
Vivi1g08792 815 ProSiteProfiles Ankyrin repeat profile. 655 687 IPR002110 GO:0005515
Vivi1g08792 815 ProSiteProfiles Ankyrin repeat profile. 558 590 IPR002110 GO:0005515
Vivi1g08792 815 Gene3D - 527 708 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08792 Vivi-Chr1 251570871 251579632 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08792 10 563 Ion Channels AT4G22200 72.310 0.0 845
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08792 K21867 - gmx:100798422 1341.25