Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08762 ATGGAGAAATACGAGCTGGTCAAGGATATAGGTTCTGGAAATTTCGGTGTTGCCAGACTGATGCGTCACAAAGACACCAATGAACTCGTTGCCATGAAATTCATTCAACGAGGTCACAAGATTGATGAGAATGTTGCTAGAGAAATCATTAATCATAGAAGTCTTCGTCATCCTAACATTATTCGCTTCAAAGAGGTGGTTTTGACTCCTACTCATCTTGGTATAGTTATGGAGTATGCTGCTGGTGGGGAGCTCTTTGAGCGAATTGTCTCTGCCGGAAGATTCAGTGAAGATGAGGCTCGATATTTCTTCCAGCAGCTCATCTCAGGAGTTAGCTACTGCCATTCCATGCAAATCTGCCATCGAGACTTGAAACTTGAGAACACGTTATTGGACGGTAGCCCTGCCCCGCGGCTCAAAATTTGCGATTTTGGTTATTCTAAGTCCTCTCTACTGCATTCTAGACCTAAATCAACAGTCGGAACTCCCGCTTACATAGCACCAGAAGTTCTTTCACGTAGAGAATACGACGGAAAGTTGGCAGATGTATGGTCATGTGGAGTGACTCTTTATGTAATGCTGGTGGGAGCATACCCATTTGAGGACCAAGATGATCCCAAAAATTTCAGGAAAACCATTAATAAAATTATGGCTATTCAATACAAGATTCCGGATTATGTTCACATATCTGAAGATTGTAAACATCTGCTGTCTCACATTTTCGTGGCAAGTCCAGCTAGGAGAATCAGCATTAAGGAAATCAAGTCTCATCCGTGGTTTTTGAAGAACTTGCCTCGAGAATTGACCGAAATGGCTCAAGCTGTTTACTACAAAAAAGAAAATCCAACTTATTCTCTTCAAAGCATTGAAGACATTATGAGTATTGTTGAAGAAGCTAAATCTCCGCCTCAAGTGTCTAGGTCGATTGGAGGGTTTGGCTGGGGAGGAGTAGAAGACGACGATGATGAAACAAAAGAAGCTGAGGCTGAGGTGGAAGAAGATGAATATGAAAAGAGAGTCAAGGAAGCACAAGAAAGTGGAGAATTCAATTTAAACTAA 1059 0.4183 MEKYELVKDIGSGNFGVARLMRHKDTNELVAMKFIQRGHKIDENVAREIINHRSLRHPNIIRFKEVVLTPTHLGIVMEYAAGGELFERIVSAGRFSEDEARYFFQQLISGVSYCHSMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSLLHSRPKSTVGTPAYIAPEVLSRREYDGKLADVWSCGVTLYVMLVGAYPFEDQDDPKNFRKTINKIMAIQYKIPDYVHISEDCKHLLSHIFVASPARRISIKEIKSHPWFLKNLPRELTEMAQAVYYKKENPTYSLQSIEDIMSIVEEAKSPPQVSRSIGGFGWGGVEDDDDETKEAEAEVEEDEYEKRVKEAQESGEFNLN 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08762 352 FunFam Serine/threonine-protein kinase SRK2E 1 79 - -
Vivi1g08762 352 MobiDBLite consensus disorder prediction 304 352 - -
Vivi1g08762 352 ProSiteProfiles Protein kinase domain profile. 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g08762 352 Coils Coil 326 346 - -
Vivi1g08762 352 SUPERFAMILY Protein kinase-like (PK-like) 1 305 IPR011009 -
Vivi1g08762 352 SMART serkin_6 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g08762 352 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Vivi1g08762 352 CDD STKc_SnRK2 3 259 - -
Vivi1g08762 352 PANTHER SERINE/THREONINE KINASE 2 298 - -
Vivi1g08762 352 Gene3D Transferase(Phosphotransferase) domain 1 80 268 - -
Vivi1g08762 352 FunFam Serine/threonine-protein kinase SRK2A 80 268 - -
Vivi1g08762 352 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
Vivi1g08762 352 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Vivi1g08762 352 Pfam Protein kinase domain 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g08762 352 MobiDBLite consensus disorder prediction 316 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08762 Vivi-Chr1 250778368 250781426 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08762 3 263 CBL-interacting serine-threonine protein kinases AT4G24400 43.333 2.24e-67 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Vivi1g08762 Pkinase 2.6e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08762 K14498 - gmx:100812259 640.188