Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08760 ATGCGACGGGTTTCCTCAACTTTTCCCTCTTCTCCATTCTTCAAATCGCTCAAATCGCCAATCGAATGCGTCGTTGTTGTTCGTATTCAAATCATGCAACAAAGTAATTCACGCAACGGTGTTCAGATTCCTCAGCTCAATTGGTTGCAGCACGCCAATGCTCACCGCAATTTCTCTTCCCAGGCCAAGTTTTTGACCTCCAATTTCCTCTTTTCTCTCCCAACTAACAAACCAGTCGACGGTTCCGGTAATAGCAGGTTTATACTCCGACAAAGTCAAAATATTCCGAGTTCACAAAGAACACAGGCTGATAAGGCCTGGCTTGCGCTTCCAAGCCTACAGATATCTAGCAAGAATTATGTCCAACCCGGAAAACATGTTAAAGTTACTTCTCAGTTTCACAATGACAGGACAACAACTTCCTTACAAGGAAACTATGAGAATGACAAGATTAACCGTTCTAATGTTACAACTACTCCAACTGTCATTAATCATACTGCTCGGGTTGTAGATAGTTCGGTGAACAATCACGCAAAGTACACAAGCCAACCCAAAGAGTCTACAAAATTTGTAGCTGATAATATTAATATTGATGATGATGACATACTCGAGAGCATTGATGTTGACCAAATTGTTGAGAAATACCAGTCCTCATGCACTCCTCAACCCCCGATGTCCAAGTTTCCTTCTATTGTACCAACTCCAGATAAGGATAACTTTGCCAGACAGGGAGATACTTTTATGCCACCCGAGCTGTGCTTGGATTGCATCCACGGACACAAGTTAGGATTATGCCCAGAAGCAGCAAGTCATTTGCAGGAATTTAAGGATAATCTTATTGCAATCTCTAATGAACTGCTTGACAATGTTGAAAATCTCAGTTCTGTGCAGATAGAAAAGCTTCGCCAAGACAGGTCACAGCTGAATAAGCAAATTCAACAGCTTGAAAAATATATTCATTCCAGTAATCTTGAAGAAGAAAGACAAAAGTCACATTTTGCTAGATCCATGGCACCACCTACATCTTCTGTGTATGAAACACCCCAGCGAAATGTCATCAACAGTGGACCAAATGGATATGATGCCCAGTCTTATATAGGGAAAGGGACATATGAGCCATCGTACCAGTCTTCGTTCTTTTCTGCAGACATGTCTGGCATGCCGCCAGGTCCAGTAGAGAGAGAGCCATTCATCCCAAAGATTATTGATGTTAATTATAGTGAAGGCTGTGGAGATAGACAGTGGAGCAGTCGTGATTTTTCTTGGACTAGAGAATTAGAGGTTAATAATAAAAAAGTATTTGGAAATCCCTCATTTCGCCCAAATCAAAGAGAGATTATTAATGCCACGATGAAGGGATGTGATGTTTTTGTTTTGATGCCCACCGGTGGAGGAAAAAGTCTCACCTATCAGCTACCAGCTCTTATTAATCCAGGCATAACATTAGTAATTTCTCCCCTTGTGTCCCTTATTCAAGATCAAATAATGCACCTATTGCAGGCAAACATACCTGCTGCTTATTTAAGTGCCAACATGGAATGGACTGAACAACAAGAGATTCTTAGAGAACTTAATTCTGATTATTGTAAATATAAGTTGTTATATGTGACACCCGAAAAGATTGCCAGAAGTGATAATCTTCTGCGACACTTAGAGAGTTTATATGTTCGTGAGTTGCTTTCAAGGATTGTAATTGATGAGGCTCACTGTGTGAGTCAATGGGGGCATGATTTTAGACCAGATTATCAGGGACTTGGTGTATTGAAACAAAAATTCCCAAATACTCCTGTTTTAGCTTTAACAGCTACAGCAACAGCTAGTGTAAAAGAAGATGTTGTGCAAGCACTCGGTCTTGTTAACTGCATTGTTTTTCGGCAAAGTTTTAATCGCCCAAATTTACGGTATTCTGTTGTTCCCAAGACCAAAAAGTGTTTGGAGGATATTGACAAATTTATTAGGGAAAATCATTTTGATGAATGCGGCATCATCTATTGTCTTTCACGAATGGACTGTGAAAAGGCTGCTGAAAAATTACAGGAATATGGGCATAAATGTGCATTTTATCATGGGAATATGGATCCTGCTCAACGTTCTTTTGTTCAAAAACAATGGAGCAAAGATGAAATCAATATTATTTGCGCTACTGTTGCATTTGGAATGGGGATTAATAAACCTGATGTCCGCTTTGTAATCCATCACTCCCTCCCAAAATCTATTGAAGGTTATCATCAGGAATGTGGACGAGCTGGTAGAGATGGTCAGCCTGCTTCCTGTGTATTATATTATAGCTACAGTGACTATATTCGAGTTAAGCATATGTTAAGCGTAGGTACGGTGGAGCAAAGTCCCATGACATCTGGATACAGTCGTTTAAATGCGAATCCAGGAAGGTTACTGGAGACAAACACCGAAAACCTTTTGCGCATGGTCGGTTATTGTGAAAATGATGTTGATTGTCGGCGCTTTATTCAGCTCGTTCATTTTGGGGAGAAGTTTGATTCTTCAACCTGTCAGAAAACATGTGATAATTGCATGAAGGTCACAAGTCTCATTGAGAAGGATGTTACCGAAACGGCAAAGCAATTGGTTGAACTCGTTAAGCTAACGGGACAGAAGGTCTCGGCATCTCATATATTAGAGGTTTATCGTGGTTCCTTAAGCCAGATGGTCAAGAAACACCGACACGAGACTGTGCGCCTTCATGGTGCCGGGAAGCATCTAGCCAAGGGTGAGGCTTCCCGTATATTGCATCATCTTGTTGTTGAGGATTTTCTTGCGGAGGAGGTAAAGAAAAGTGATTTTTATGGATCAGTATCATCAGTATTGAAGGTAAATGAGCAGAAGGTCCGTAATGTATTGTTTGGCGGGCAAAGAATTATATTGAGATTCCCGTCTTCTGTGAAAGCATCAAAGCCCTTGAAATGTGATTTAACTCCAGCCAGAGGTTCTCTGACATCTACGAAGCTGAATCTTCCCATTGATATCCCTGACGAACCTCAAACTGAAGTAGACTTGAATCTATCAGCTAAGTTGTACACTGCTCTGCGGATGTTGCGGACAGCTCTCTGTAGAGAAGCTGGAGAGGGTGTTTATGCTCACCACATATTTGGCAATGCTACGTTGCAGCAGATAAGCAAGAAAATACCGAGAACAAAGGAAGAACTTCTTGATATCAATGGCATTGGCAAGATTAAAGTAAACAATTATGGGGATCGGTTACTTGAAACCATTGAGAATACCATACACGAATACTACAATACAGATAAAAACAGCAGTGGCGGCAAAGGCAGCACTGATTCGGCCAAAAGAAGACGAGCGGCAAATAGAGACCCAGATTCAAATGCTGAGGATGACGAGGTCTTAATCCAAAGTACTGGTCCCTCCAAGAAAAGGACGGTAAAGAGACAAATCAGAAAGGTTGTAATATCCGATTCAGAAGAAGAGGAGGATTATTTCCACGGGTGCCTTGATGAGGACCTAGACTGTGTCAACATTGAAAACGTCGTAATAGATAAAGTAACTGTTACAAATCCTGCAGGAAGAGTACTACCTCAATGGACATCATCTTGA 3570 0.4106 MRRVSSTFPSSPFFKSLKSPIECVVVVRIQIMQQSNSRNGVQIPQLNWLQHANAHRNFSSQAKFLTSNFLFSLPTNKPVDGSGNSRFILRQSQNIPSSQRTQADKAWLALPSLQISSKNYVQPGKHVKVTSQFHNDRTTTSLQGNYENDKINRSNVTTTPTVINHTARVVDSSVNNHAKYTSQPKESTKFVADNINIDDDDILESIDVDQIVEKYQSSCTPQPPMSKFPSIVPTPDKDNFARQGDTFMPPELCLDCIHGHKLGLCPEAASHLQEFKDNLIAISNELLDNVENLSSVQIEKLRQDRSQLNKQIQQLEKYIHSSNLEEERQKSHFARSMAPPTSSVYETPQRNVINSGPNGYDAQSYIGKGTYEPSYQSSFFSADMSGMPPGPVEREPFIPKIIDVNYSEGCGDRQWSSRDFSWTRELEVNNKKVFGNPSFRPNQREIINATMKGCDVFVLMPTGGGKSLTYQLPALINPGITLVISPLVSLIQDQIMHLLQANIPAAYLSANMEWTEQQEILRELNSDYCKYKLLYVTPEKIARSDNLLRHLESLYVRELLSRIVIDEAHCVSQWGHDFRPDYQGLGVLKQKFPNTPVLALTATATASVKEDVVQALGLVNCIVFRQSFNRPNLRYSVVPKTKKCLEDIDKFIRENHFDECGIIYCLSRMDCEKAAEKLQEYGHKCAFYHGNMDPAQRSFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQPASCVLYYSYSDYIRVKHMLSVGTVEQSPMTSGYSRLNANPGRLLETNTENLLRMVGYCENDVDCRRFIQLVHFGEKFDSSTCQKTCDNCMKVTSLIEKDVTETAKQLVELVKLTGQKVSASHILEVYRGSLSQMVKKHRHETVRLHGAGKHLAKGEASRILHHLVVEDFLAEEVKKSDFYGSVSSVLKVNEQKVRNVLFGGQRIILRFPSSVKASKPLKCDLTPARGSLTSTKLNLPIDIPDEPQTEVDLNLSAKLYTALRMLRTALCREAGEGVYAHHIFGNATLQQISKKIPRTKEELLDINGIGKIKVNNYGDRLLETIENTIHEYYNTDKNSSGGKGSTDSAKRRRAANRDPDSNAEDDEVLIQSTGPSKKRTVKRQIRKVVISDSEEEEDYFHGCLDEDLDCVNIENVVIDKVTVTNPAGRVLPQWTSS 1189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08760 1189 PANTHER DNA HELICASE RECQ FAMILY MEMBER 412 1095 - -
Vivi1g08760 1189 SMART ultradead3 435 638 IPR014001 -
Vivi1g08760 1189 MobiDBLite consensus disorder prediction 1098 1116 - -
Vivi1g08760 1189 ProSiteProfiles HRDC domain profile. 1005 1087 IPR002121 GO:0003676
Vivi1g08760 1189 FunFam Bloom syndrome, RecQ helicase 630 849 - -
Vivi1g08760 1189 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 414 771 IPR027417 -
Vivi1g08760 1189 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 647 807 IPR001650 -
Vivi1g08760 1189 SMART helicmild6 672 753 IPR001650 -
Vivi1g08760 1189 SUPERFAMILY HRDC-like 1008 1080 IPR010997 GO:0000166|GO:0044237
Vivi1g08760 1189 Gene3D - 630 848 IPR027417 -
Vivi1g08760 1189 MobiDBLite consensus disorder prediction 335 357 - -
Vivi1g08760 1189 FunFam ATP-dependent DNA helicase RecQ 412 629 - -
Vivi1g08760 1189 MobiDBLite consensus disorder prediction 1085 1128 - -
Vivi1g08760 1189 Gene3D - 404 629 IPR027417 -
Vivi1g08760 1189 Pfam RQC domain 852 967 IPR018982 GO:0006260|GO:0006281|GO:0043138
Vivi1g08760 1189 NCBIfam RecQ family ATP-dependent DNA helicase 431 905 IPR004589 GO:0004386|GO:0006310
Vivi1g08760 1189 Gene3D - 852 962 IPR036388 -
Vivi1g08760 1189 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 561 570 IPR002464 -
Vivi1g08760 1189 Pfam RecQ zinc-binding 765 844 IPR032284 -
Vivi1g08760 1189 CDD DEXHc_RecQ 430 629 - -
Vivi1g08760 1189 Pfam DEAD/DEAH box helicase 441 609 IPR011545 GO:0003676|GO:0005524
Vivi1g08760 1189 Coils Coil 298 325 - -
Vivi1g08760 1189 Gene3D HRDC domain 1004 1093 IPR044876 -
Vivi1g08760 1189 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 447 622 IPR014001 -
Vivi1g08760 1189 SMART hrdc7 1005 1087 IPR002121 GO:0003676
Vivi1g08760 1189 CDD SF2_C_RecQ 630 762 - -
Vivi1g08760 1189 Pfam HRDC domain 1009 1077 IPR002121 GO:0003676
Vivi1g08760 1189 SMART RQC_2 854 965 IPR018982 GO:0006260|GO:0006281|GO:0043138
Vivi1g08760 1189 Pfam Helicase conserved C-terminal domain 646 752 IPR001650 -
Vivi1g08760 1189 MobiDBLite consensus disorder prediction 332 357 - -
Vivi1g08760 1189 ProSiteProfiles Rhodanese domain profile. 662 697 IPR001763 -
Vivi1g08760 1189 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 628 895 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08760 Vivi-Chr1 250736014 250748380 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08760 661 770 Eukaryotic Initiation Factors Gene Family AT3G19760 23.636 4.46e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08760 K10901 - gmx:100800006 1709.5