Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08757 ATGGCAAGACCCTGTGCGAGTTTGAAGGAAATCAATGAAAGTAAGGAACTCTGGAAAATCGCGGTCAGAATCCATCACAAATGGACAGTTTTGTCGAAGACCAAAGAGCACTTCGAAATGATTCTGGTCGATAAAGAGGGTACTGATATTCACTGCAGAGTACCAAGTGCGCTTAAACATACTTATGATTCTGTTTTAACGGTTAAGAACACATATACCATCTCAAATTTCCAAGTTACTTTGAATGATCTTATGTTCAAGCCTTCCCAGCATAAATATATCCTAACTTTCACCGGTGGTACTTCTGTTTCTGACAAGAACAAACACGACATACCACAAAAACCACTTATCTTCACTCCTTTTGGTGATATTCTTACCAGCAAAGGGAATAGGGATGTGTTGATTGATATCATAGGAATCGTTGTGGAAATTGGATACACCCAGATTCACAATTCTAACAAAAAGCAGCAGATCAATTTGGTCCTCAAGGATTTGGGAAACAACATCCTTAATTGTACATTGTGGGAAAGTTATGCGGTCCAATTTCATGATTTCTATAGTTCAAGAAAAGATTTCACAATACCAACGGTAATTGTTTTGCAGTTTGCCAGAGTCAAAGAGGAAGGCAAATATCCTTTATGTGTTTCCAACACATTCAACGTTACCAAATTGCACATCAACGATGATCTCCCTGAAATTCAGAACTTCTTAAAGAGCATCCCTAAACTGCCAATGGGCGAAATATCATCCGAAGGTATTGGTGCCATTTCACAGCATTCACAAACAAGCGGCACTACTCACCTTAGCCCTTATGACAAGTTCATGTATAAGGCTATATTACTCCCTCTGCGTGAAATTGTCAACCTAAAATCCGTTACTCAGTGTATAACTGTGGCAAAAACTACCAGACTCAAGGCTGCACCTGGTGGATGGTATTACAAAGCTTGCCATGCATGTACAATGGTTGCTAAGGGTAATCAACCACCATATGTTTGTGGAAAAGGACATCAGACAGAGACTGAAATTTACCGGTATAAAATTCTTATTGATGTCGTGCACGAAGGGTGTGAAACTACTTTTGTTCTATGGGACCGCGAATGTTTGCAGCTGTTGGAAATTACTTCGGCACAAATGCGGAGCACCTTGCTTGAGGCTGGGATCTCTGACCCCCTTGAATTTCCTTTAGCACTTGATGCTTTGGTCGGACTAGATTTGGCATTTAAGGTCAAGTGGCAGCCTTCATGGAACAATGCAACTGTCGTATCCATCTACGAAGATAAAGCTGTGATCAAAGAACTAGAAAAATTAATGCCTCAGCCATTGGCACCATCTCCATCTCCCGCAACACCAAAGAAACTGCAGATTACTGAAAGTGTGAATGATGCTTTGCCAATTGACGACTGGAATGTGGTTGATGAGCAAGACGTAACCTCCGATCAGATCATGTTGACACCTACCCCAAGTGCAACCTCCAAAACTGATGCCCCAGGAATATCTACCGAGCACAGCCCTCTGCCAGCTACAACATCTGTGGCCTCCAAAAGATTTGCGCCCCAAGGATCTTTTGATCTCACATTGGCTAATGGTCTCTGTGACGAACAAGGTTCTACAACAAAATTGAAGAAAATCATCAAGTTGGAAAACAGTCCTCAAAAAAACATTCAACCTTAG 1671 0.4141 MARPCASLKEINESKELWKIAVRIHHKWTVLSKTKEHFEMILVDKEGTDIHCRVPSALKHTYDSVLTVKNTYTISNFQVTLNDLMFKPSQHKYILTFTGGTSVSDKNKHDIPQKPLIFTPFGDILTSKGNRDVLIDIIGIVVEIGYTQIHNSNKKQQINLVLKDLGNNILNCTLWESYAVQFHDFYSSRKDFTIPTVIVLQFARVKEEGKYPLCVSNTFNVTKLHINDDLPEIQNFLKSIPKLPMGEISSEGIGAISQHSQTSGTTHLSPYDKFMYKAILLPLREIVNLKSVTQCITVAKTTRLKAAPGGWYYKACHACTMVAKGNQPPYVCGKGHQTETEIYRYKILIDVVHEGCETTFVLWDRECLQLLEITSAQMRSTLLEAGISDPLEFPLALDALVGLDLAFKVKWQPSWNNATVVSIYEDKAVIKELEKLMPQPLAPSPSPATPKKLQITESVNDALPIDDWNVVDEQDVTSDQIMLTPTPSATSKTDAPGISTEHSPLPATTSVASKRFAPQGSFDLTLANGLCDEQGSTTKLKKIIKLENSPQKNIQP 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08757 556 PANTHER OS03G0429900 PROTEIN 9 504 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vivi1g08757 556 SUPERFAMILY Nucleic acid-binding proteins 118 241 IPR012340 -
Vivi1g08757 556 Gene3D - 281 437 IPR012340 -
Vivi1g08757 556 MobiDBLite consensus disorder prediction 483 507 - -
Vivi1g08757 556 CDD RPA1_DBD_B_like 136 239 - -
Vivi1g08757 556 CDD RPA1_DBD_A_like 19 103 - -
Vivi1g08757 556 Gene3D - 109 243 IPR012340 -
Vivi1g08757 556 SUPERFAMILY Nucleic acid-binding proteins 295 425 IPR012340 -
Vivi1g08757 556 SUPERFAMILY Nucleic acid-binding proteins 7 103 IPR012340 -
Vivi1g08757 556 Gene3D - 4 107 IPR012340 -
Vivi1g08757 556 Pfam Domain of unknown function DUF223 39 134 IPR003871 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08757 Vivi-Chr1 250673912 250677932 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08757 1 386 Core DNA Replication Machinery Family AT5G08020 23.267 1.15e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08757 - - vvo:131608135 822.772