Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08752 ATGCCCTATCTTTCTTCTCCTCATTATATTAATATTCTCTTTTTTTCATCATATCCTCAAATTTGGAAGAAGATGGAAATCAATATTAGTTCATATGAATCTTCTAACTTGAGCAGCAAGCAACATCATGATGTTAAAGAAGATTATACATCATCTTCATCATTCAATCTAACAAATGTTTCAAAACTCATTCTTCCACCACTTGGTGTTCCTAAAGAGAATCATGTTTACTCTAAATGGATCATTTCACCAATGGATTCAAGATATAGGTGGTGGGAGAGTTTTATGGTTGTATTGGTAGCATATACTGCATGGGTTTATCCATTTGAAGTTGCTTTCATGCATTCTTCAAATAGGGAGCTATATATTGTGGACAATATTGTTGATCTTTTCTTTGCTATTGATATTGTTATGACATTCTTTGTGGCATTCATTGATGGAACTACTCATCTACTTGTTAGAGATTCCAGAAAAATTGCTGTTAGGTACTTGTCATCATGGTTCATAATGGATGTGGCATCAACAATACCATACGAAGCAATAGGCTACATTGGCAATCACAAATTGAGTCTCCCTTTCTTTCTCTTAGGAATGCTCAGATTTTGGAGAATCAGACGTGTCAAACAATTCTTCACAAGGCTTGAAAAAGACATCAGATTCAGCTATTTCTGGGTCAGATGTGCCAGGCTTCTTTCTGTAACACTTTTTTCAGTTCATTGTGCTGGTTGTCTCTATTACATGCTAGCTGATAGGTACCCTCATAAAGGTAAAACATGGATTGGAGCTGTCATTCCAAATTTCAAAGAGACAAGTCCTAGAACAAGATACATTTCAGCCATATACTGGTCCATCACCACGATGACTACCGTCGGTTATGGCGATCTTCACGCTGTCAACACCATGGAAATGATTTTCATTATTTTCTATATGCTCTTCAACCTCGGCCTAACCGCTTACTTAATCGGTAACATGACGAATCTTGTAGTTGAAGGAACTCGCCGCACAATGGAATTCAGAAATAGCATTGAAGCAGCATCGAACTTTGTGTACCGAAATCGCTTGCCACCGAGGCTAAAAGATCAAATCCTTGCTTACATGTGTTTGAGATTTAAGGCGGAAAGCTTGAATCAGCATCAGTTAATTGAACAGCTGCCAAAGTCAATTTGCAAAAGCATTTGCCAGCATTTGTTTTTTCCAACTGTAGAGAAAGTCTATCTCTTCAAAGGTGTCTCGAAAGAAATCCTGTTGTCCCTAGTTGCAAAAATGAATGCGGAATACATACCACCGAAAGAGGATGTTATAACGCAAAACGAAGCGCCGGACGATGTTTACATTATAGTGTCGGGAGAAGTAGAGATCATAGAAAGTGTGATAGAAAAAGAGAGAATTTTAGGGACTCTAACAACAGGTGAAATGTTTGGAGAAGTTGGTGCACTTTGTTGTAGGTCTCAAAGCTATACCTATAGAACCAAGACATTCACAGAGATTCTGAGGTTGAAAACCAGTGCTCTTGTAGAAGAAATGCATATTAAGAAAGAAGATAATATACTAATACTCAAAAACTTCCTTCAGCATTATAAGGAGCTTAAGGATTTGAGTGTCAAAGATGTAATGGTAGAGAATGTTGAAGAAGAGGATCTTAACATGTCTGTGAATTTGTTAACTGTGGCTAGCACTGGTAATGCTGCTTTTCTTGAGGAGCTTCTAGGAGCTGGTTTGGATCCTGATATTGGAGACTCTAAAGGAAAAACTCCATTGCATATAGCAGCATCAAATGGACATGAAGAGTGTGTGAAAGTGTTGCTCAAACATACATGCAACATTCATATAAAAGATATGAATGGTAACACTGCACTATGGTATGCAATAGCTTCAAAGCATTACTCAATCTTCAGAATCCTCTATCAACTATCTGCACTGTCTGATCCATACACAGCTGGAAATCTCCTATGTCTAGCAGCAAAAAGAAACGATTTAACCGTGATGAACGAGCTTCTAAAGCAAGGACTAAACATTGACTCAAAAGATGGACACGGCACGAAGGCTATACAAATTGCTATAACAGAAAATCTTGTTGACATGGTTCAGTTGCTTGTTATGAATGGCACAGAAGTTGATGATATACATATCCATGAATTTTCTGCATCCACCTTAAGTGAATTATTGCAGAAACGCGAAATCGGGCATTTAATTAATGTGAATGAGGCAATGCCTAGTGAATTTGTATGTGAAGGTGAAAATGAAGAAGAACAGAAACAAATTTGGAGAAGATATAATGGAGTAGAGTTTCCGAGAGTTAGTATATATAGAGGTTACCCTATATCGAGAAGAGAAAAAGGTTTCATTGAAGCCGGAAAGTTAATAAAGTTGCCCGATTCATTAGAAAAGCTCAAAATTATTGCAGGTGAAAAATTTGAGTTTGATGCAAGAGATGCAAAGGTGAGAAATGAAGAAGGAGCAGAAATTAACAGTATTGATGTGATCAGAGATAATGACAAACTTTTTATTGTTGAATAG 2517 0.3711 MPYLSSPHYINILFFSSYPQIWKKMEINISSYESSNLSSKQHHDVKEDYTSSSSFNLTNVSKLILPPLGVPKENHVYSKWIISPMDSRYRWWESFMVVLVAYTAWVYPFEVAFMHSSNRELYIVDNIVDLFFAIDIVMTFFVAFIDGTTHLLVRDSRKIAVRYLSSWFIMDVASTIPYEAIGYIGNHKLSLPFFLLGMLRFWRIRRVKQFFTRLEKDIRFSYFWVRCARLLSVTLFSVHCAGCLYYMLADRYPHKGKTWIGAVIPNFKETSPRTRYISAIYWSITTMTTVGYGDLHAVNTMEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVYRNRLPPRLKDQILAYMCLRFKAESLNQHQLIEQLPKSICKSICQHLFFPTVEKVYLFKGVSKEILLSLVAKMNAEYIPPKEDVITQNEAPDDVYIIVSGEVEIIESVIEKERILGTLTTGEMFGEVGALCCRSQSYTYRTKTFTEILRLKTSALVEEMHIKKEDNILILKNFLQHYKELKDLSVKDVMVENVEEEDLNMSVNLLTVASTGNAAFLEELLGAGLDPDIGDSKGKTPLHIAASNGHEECVKVLLKHTCNIHIKDMNGNTALWYAIASKHYSIFRILYQLSALSDPYTAGNLLCLAAKRNDLTVMNELLKQGLNIDSKDGHGTKAIQIAITENLVDMVQLLVMNGTEVDDIHIHEFSASTLSELLQKREIGHLINVNEAMPSEFVCEGENEEEQKQIWRRYNGVEFPRVSIYRGYPISRREKGFIEAGKLIKLPDSLEKLKIIAGEKFEFDARDAKVRNEEGAEINSIDVIRDNDKLFIVE 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08752 838 Pfam KHA, dimerisation domain of potassium ion channel 765 836 IPR021789 -
Vivi1g08752 838 CDD CAP_ED 406 509 IPR000595 -
Vivi1g08752 838 ProSiteProfiles cAMP/cGMP binding motif profile. 406 525 IPR000595 -
Vivi1g08752 838 ProSiteProfiles Ankyrin repeat region circular profile. 581 612 - -
Vivi1g08752 838 Pfam Ion transport protein 89 335 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vivi1g08752 838 SUPERFAMILY cAMP-binding domain-like 333 524 IPR018490 -
Vivi1g08752 838 ProSiteProfiles Ankyrin repeat profile. 581 613 IPR002110 GO:0005515
Vivi1g08752 838 FunFam Potassium channel KAT3 91 330 - -
Vivi1g08752 838 FunFam Potassium channel KAT2 394 530 - -
Vivi1g08752 838 PRINTS EAG/ELK/ERG potassium channel family signature 302 313 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vivi1g08752 838 PRINTS EAG/ELK/ERG potassium channel family signature 102 109 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vivi1g08752 838 PRINTS EAG/ELK/ERG potassium channel family signature 276 293 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vivi1g08752 838 PRINTS EAG/ELK/ERG potassium channel family signature 320 329 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vivi1g08752 838 PRINTS EAG/ELK/ERG potassium channel family signature 136 145 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vivi1g08752 838 PRINTS EAG/ELK/ERG potassium channel family signature 125 135 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vivi1g08752 838 Gene3D - 92 329 - -
Vivi1g08752 838 SUPERFAMILY Voltage-gated potassium channels 84 329 - -
Vivi1g08752 838 PANTHER POTASSIUM CHANNEL AKT1 56 837 IPR045319 GO:0005249|GO:0006813
Vivi1g08752 838 SMART ANK_2a 614 644 IPR002110 GO:0005515
Vivi1g08752 838 SMART ANK_2a 678 707 IPR002110 GO:0005515
Vivi1g08752 838 SMART ANK_2a 548 577 IPR002110 GO:0005515
Vivi1g08752 838 SMART ANK_2a 645 674 IPR002110 GO:0005515
Vivi1g08752 838 SMART ANK_2a 581 610 IPR002110 GO:0005515
Vivi1g08752 838 Pfam Ankyrin repeats (3 copies) 557 636 IPR002110 GO:0005515
Vivi1g08752 838 ProSiteProfiles KHA domain profile. 765 838 IPR021789 -
Vivi1g08752 838 Gene3D Jelly Rolls 374 549 IPR014710 -
Vivi1g08752 838 SUPERFAMILY Ankyrin repeat 542 724 IPR036770 -
Vivi1g08752 838 PRINTS Ankyrin repeat signature 661 675 IPR002110 GO:0005515
Vivi1g08752 838 PRINTS Ankyrin repeat signature 582 597 IPR002110 GO:0005515
Vivi1g08752 838 SMART cnmp_10 406 523 IPR000595 -
Vivi1g08752 838 Gene3D - 550 731 IPR036770 -
Vivi1g08752 838 Pfam Cyclic nucleotide-binding domain 426 506 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08752 Vivi-Chr1 250642158 250650848 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08752 46 586 Ion Channels AT4G22200 72.232 0.0 816
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08752 K21867 - gmx:100798422 1278.46