Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08748 ATGAGATTGAAGAAGAACAACATGGGAAGAAGAAACGGTGGCGGCGGTGGCGGTGGCGGTGGAGGAAGATCTCTGCAATTCGCTCTTCGCCGTCGAGTTGAACTCTGCAAATCAAAGTACAAAACCGCCGAAGAAATCGTCGATCATCTTCGCTCCAATTACCCTGATTACCACCGAACTAAGTCTCAAACCCTAGTTCGATTCGTTGAAGACGCTCTTCAACATTCCAACAATACTCCCACACGGAAGCACAATCCAATCAACAATGCCGATGACGATGATGAGGAAGATGAGAATGAGAATCGAAGCGCTTCTCGAAAGAGACGTAAGGAAAGTAAGGATGAATCTGAAGATAGATTGCAAAAGATGGAAGCGCTTCACATTAAAGCACGGATGAGTAAACAGGTTCCATCAACTTCCTCTTCCTCCGATTCTGCTTCGGCTAGCGATGATGATGAAGAAGGAGCAGTTTCGACTTCGGAGGACGGGATTTACAGCGAGAAAGTTGAACCTGCTTTTGACTTGATGAAGGATATGCTGCGACATTCCTATACTGGAGCAACAAAATCAAAGTCAGTATCCGAGGTGGAAGAAAAAGAAAAAGAAAAGAATGTGGAATTGGATATTGGTAATTCGAGTAAGGCTACTATTACTGTCAATGTGGATGGTGGTAAATCAAAATCGACAGCGACAGAAGGGAAACACTCGAAGGGTTCGGTTTCGAATACCGGTGGTGGTGGTGAGGTTGAGGTGAAAGGGAAAGAGGGGCCGACGTTTAAGGATTTGGGTGGGATGAAGGCTATTTTAGAGGAGTTAATGATGGATATTGTGTCGTTGTGTAATCCTCAGTTGCCTAGACATTTAGGGGTGAGACCAGTTACTGGAATTTTGTTGCATGGACCACCTGGTTGTGGAAAGACTAGACTTGCTCATGCTATAGCGAATGAAACTGGTCTTCCTTTTCATCATATTTCTGCTACGGAGGTGGTTTCTGGAGTCTCAGGTGCATCTGAAGAATATATTAGAGAGCTTTTTGATAAAGCAAAAAGGACTGCTCCATCAATTGTCTTTATTGATGAGATTGATGCAATTGCTTCAAAAAGAGAGAATTTACAGCGTGAGATGGAGAAACGAATTGTGACCCAGTTAATGACTTCCATGGATGAACCAGAGAGTTCTGAGGAACCTCGTGGCTATGTTCTTGTAATTGGGGCCACAAATAGACCTGATTCTCTTGACCCTGCTCTCAGACGGCCTGGTCGGTTTGATCGTGAGTTTCTTGTTGGTGTTCCGGATGAATCTGCCAGGGTGGAGATCCTTTCCGTGGTTACACGCAATCTTAAACTTGATGGTTCGTTTGATCTGCACAAAATAGCCAGGTCCACGCCAGGATTTGTCGGTGCTGATTTGACTGCTTTGGCTAACAAAGCTGGTAATTTAGCAATGAAGAGGATACTTAATGAAAGGAAGCGTGAATTATCTCAAGATATCACAGATGAGGATACTCAAGAATGGTGGAAAGAACCTTGGTTGCCTGAAGAAATAAATAAGCTTGCTATCAAAATGTCTGATTTTGAGGAAGCAGCCAAAATGGTGCAGCCTTCAGCAAGAAGAGAAGGGTTCTCTTCCATTCCTAATGTTAAATGGGAAGATGTTGGCGGGCTTGATTTATTAAGGCATGAGTTTGATCGCTATATTGTAAAGCGTATTAAATATCCTGAGTTGTATGAGGGAATTGGGATGAATCTCGAGTCTGGATTTTTACTATATGGACCTCCAGGATGTGGTAAAACACTTATTGCCAAGGCTGTTGCCAATGAGGCGGGAGCTAATTTCATTCATATTAAGGGACCCGAACTTCTAAATAAGTATGTCGGGGAAAGCGAGCTTGCAGTGCGGACATTGTTTAGTCGTGCAAGGACTTGTGCACCATGTGTACTATTTTTTGATGAGGTTGATGCTCTGACTACCGAACGCGGTAAAGAAGGTGGATGGGTTATTGAAAGACTATTGAACCAGTTGCTTATTGAGTTAGATGGTGCTGAGAATCGGAGAGGTGTATTTGTGATTGGTGCAACAAATAGGCCCGAGGTGATGGACCGTGCTCTCTTGCGGCCTGGTAGATTCGGTAAACTGCTTTATGTTCCTCTTCCAAGCTCAGATGACCGTGTTTTGATATTGAAAGCTCTTGCAAGGAATAAACCTATTGATTCTAGTGTGGATTTGAGTGCCATTGGAAGAATGGAATCATGTGAAAACCTTAGTGGTGCCGATCTTGCCCAATTGATGGGTGAAGCAGTAATGGCTGCCCTTGATGAGAAATTGAGCTCAACTGAGACAACCTCATTGATCATTAAGGCAAGTCATTTTGAGCTAGCACTAAGTAAAGCTTCTCCGTCTGTGTCGGACAAGCAAAGACAGTACTATGAGCGTTTGTCAAAGAGCCTAAGAGCAGCATGA 2460 0.4374 MRLKKNNMGRRNGGGGGGGGGGRSLQFALRRRVELCKSKYKTAEEIVDHLRSNYPDYHRTKSQTLVRFVEDALQHSNNTPTRKHNPINNADDDDEEDENENRSASRKRRKESKDESEDRLQKMEALHIKARMSKQVPSTSSSSDSASASDDDEEGAVSTSEDGIYSEKVEPAFDLMKDMLRHSYTGATKSKSVSEVEEKEKEKNVELDIGNSSKATITVNVDGGKSKSTATEGKHSKGSVSNTGGGGEVEVKGKEGPTFKDLGGMKAILEELMMDIVSLCNPQLPRHLGVRPVTGILLHGPPGCGKTRLAHAIANETGLPFHHISATEVVSGVSGASEEYIRELFDKAKRTAPSIVFIDEIDAIASKRENLQREMEKRIVTQLMTSMDEPESSEEPRGYVLVIGATNRPDSLDPALRRPGRFDREFLVGVPDESARVEILSVVTRNLKLDGSFDLHKIARSTPGFVGADLTALANKAGNLAMKRILNERKRELSQDITDEDTQEWWKEPWLPEEINKLAIKMSDFEEAAKMVQPSARREGFSSIPNVKWEDVGGLDLLRHEFDRYIVKRIKYPELYEGIGMNLESGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCAPCVLFFDEVDALTTERGKEGGWVIERLLNQLLIELDGAENRRGVFVIGATNRPEVMDRALLRPGRFGKLLYVPLPSSDDRVLILKALARNKPIDSSVDLSAIGRMESCENLSGADLAQLMGEAVMAALDEKLSSTETTSLIIKASHFELALSKASPSVSDKQRQYYERLSKSLRAA 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08748 819 FunFam Ribosome biogenesis ATPase RIX7 248 429 - -
Vivi1g08748 819 Gene3D - 431 539 - -
Vivi1g08748 819 PANTHER AAA-FAMILY ATPASE 110 816 - -
Vivi1g08748 819 ProSitePatterns AAA-protein family signature. 400 418 IPR003960 GO:0005524|GO:0016887
Vivi1g08748 819 ProSitePatterns AAA-protein family signature. 687 705 IPR003960 GO:0005524|GO:0016887
Vivi1g08748 819 MobiDBLite consensus disorder prediction 220 243 - -
Vivi1g08748 819 MobiDBLite consensus disorder prediction 1 24 - -
Vivi1g08748 819 FunFam ATPase, AAA family protein 545 737 - -
Vivi1g08748 819 Pfam ATPase family associated with various cellular activities (AAA) 296 429 IPR003959 GO:0005524|GO:0016887
Vivi1g08748 819 Pfam ATPase family associated with various cellular activities (AAA) 588 716 IPR003959 GO:0005524|GO:0016887
Vivi1g08748 819 MobiDBLite consensus disorder prediction 100 129 - -
Vivi1g08748 819 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 545 814 IPR027417 -
Vivi1g08748 819 MobiDBLite consensus disorder prediction 75 165 - -
Vivi1g08748 819 Gene3D - 545 810 IPR027417 -
Vivi1g08748 819 MobiDBLite consensus disorder prediction 220 256 - -
Vivi1g08748 819 Coils Coil 106 126 - -
Vivi1g08748 819 Gene3D - 246 429 IPR027417 -
Vivi1g08748 819 Pfam AAA+ lid domain 739 779 IPR041569 -
Vivi1g08748 819 Pfam AAA+ lid domain 453 501 IPR041569 -
Vivi1g08748 819 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 258 537 IPR027417 -
Vivi1g08748 819 SMART AAA_5 583 719 IPR003593 GO:0016887
Vivi1g08748 819 SMART AAA_5 292 432 IPR003593 GO:0016887
Vivi1g08748 819 Gene3D - 718 795 - -
Vivi1g08748 819 FunFam Cell division control protein 48 homolog C 431 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08748 Vivi-Chr1 250521911 250528385 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08748 516 800 Calmodulin-binding Proteins AT3G56690 44.948 9.32e-69 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08748 K14571 - gmx:100809594 1061.98