Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08746 ATGGATGAGGTAAAACATAAATCGAGAAAAGAAGACGGTGATTCGAAGAGGAGTCATCGCGATCGCGATAGAACTGGTGAAAGAGGTAAGGATAAGGATAGAAGTGAAGGTAGGCATAAGGATAATCGGGAGAAGAGGGATCGGGAGTCTCGAAGACATGATAGAGAGAAAAGTAGTGATTCTGATGATAAGCATGATAGAGAGAGGGAGAAAAGGAGAGATGTTAAGGAGAAGGATAGGGTGCGTGTTCATGAGGTTGAGAGAGAGAAAGTGAGGGATAGGAAGAGGGAAAGAGATAGGGAAGAGAAAGAGAAGGAGAGAGTGAGGGAGAAAGAAAGAGATAGAGAAGAGAAAGAAAAGGAGAGAGTGAGGGAGAGGGAAGACAAGGAGAAGGAGAGATTAAAGGAGAAAGAAAGAGAGAGGGAAAGAAAGGAAGAGAAGGAGAGGATTAGAGAGAAAGAAAGGGTGAGGGAGAGGCGGGATCATGAGAGAGAGAAGGAAAAAGAAAAGGAAAAGGAAAGGGATAGAGATAAAGGGAGGAGAGGACGAGAGAGGGAGAAGCATAGAGATGTTGATAGTGAAAACAGTGATGGTGAGTTGAGGGAGAGGAATCGGAAGCGGCATAAGAAAGAGGACGAGGATTATAAGGGGAGAGAGAAGGAGAAAAGTTCTAGCAAATCAAACAGGAAAATTGAGGGAATTGATGGAAGTCCTAGAAGAAAGAGTGACGGGGATGACTCGGATTCTAAAGACAGAGAGAAAAAACCTACCCGTGAGGAGGAGATGGAAGATGAACAAAGGAGGTTAGATGATGAAATGGAAAAACGGAGGAGAAGAGTTCAAGAGTGGCAGGAGTTAAGGAGGAAGAAGGAAGAGGCGGAAAGAGAAAAGCAAGGTGAAGCAAGTGCTGCTGAACTTGAGTCGGGAAAGGCTTGGACACTTGAAGGGGAGGAATCTGATGATGAAGATGGAACAGGTAAACATACTGCTATGGATGTAGACGAAGACGAAAAACCTGCTGATAAGGAACCTATGGAGTCAATGGTGGTAGATGTTGACAATGGAACAGTTGCGCCTGATTTACAAAATGGAGATATTGGTGCTCCTTCAGACGAGGAAATAGACCCATTGGATGCTTTTATGAATTCTATGGTTCTTCCTGAGGTTGAAAAGCTGAACAATACTGTTAACTCAACACCTTCTGATATAACTTCTGACTTGAAACCCCAAGATAAAGGGGACGGGCGTAGTAATGGCAGACAGTCAAGGAAAGGTTCAGGGAAGTCTATTGGCAGGATAATTCCTGGCGAAGAGTCCGACTCAGATTATGCAGATCCTGAAACTGACGGGGATCCAGTTGAAGAAGATGATGACGAGTTCATGAAAAGAGTGAAGAAAACGAAAGTTGAAAAACTTTCTTTAGTTGACCACTCAAAGATTGACTATATACCGTTCAAAAAGAATTTCTATATTGAAGTGAAGGAGATCTCAAAGATGACTCTTGAAGAAGTTGCTTTATACAGGAAGCAGTTAGAGTTAAAGATACATGGAAAGGATGTGCCCAAGCCTATAAAGTCATGGAACCAGACTGGACTTACTAGCAAAATTTTGGATACAATAAAGAAGGCGAACTTTGAAAAGCCAATGCCTATTCAAGCTCAAGCGTTGCCTGTAATTATGAGTGGCCGAGATTGCATAGGCATTGCCAAAACCGGGTCTGGTAAAACACTTGCTTTTGTTCTGCCAATGTTGAGGCATATCAAGGATCAGCCACCAGTTCTTGCAGGAGATGGACCTATTGGGCTTATTATGGCCCCTACAAGAGAGCTTGTTCAACAGATTCACAGTGATATAAAGAAGTTTACAAAGGTAATGGGTATCAGGTGTGTCCCTGTCTATGGAGGCTCTGGTGTTGCTCAACAAATCAGTGAGTTGAAACGTGGTACTGAGATAGTGGTTTGTACTCCAGGTAGGATGATTGACATACTATGCACCAGTAGTGGGAAAATAACTAATTTGCGTAGAGTCACCTATCTGGTAATGGATGAGGCAGATCGAATGTTTGACATGGGCTTTGAACCTCAAATCACGAGAATAGTTCAAAATATTCGACCGGATCGTCAAACAGTGCTTTTCTCTGCTACTTTTCCCCGCCAGGTTGAAATTTTAGCTCGCAAGGTTTTGAATAAACCTGTTGAAATGCAAGTTGGTGGGAGGAGTGTTGTGAACAAAGATATTGCACAGTTAGTTGAAGTGAGGCCAGAAAATGAGAGGTTCCTACGACTCTTGGAACTACTCGGAGAATGGTACGAAAAGGGAAAGATTTTAATATTTGTCCACTCACAGGAGAAATGTGATTCCTTGTTCAAGGATCTACTCAGGCACGGTTATCCTTGTCTTTCTCTTCATGGAGCTAAGGATCAAACAGACCGTGAATCCACAATATCTGATTTTAAAAGCAATGTTTGCAATTTGTTGGTTGCGACAAGTATTGCTGCTAGGGGATTAGATGTCAAGGAGCTAGAATTGGTGATCAATTTTGATGTTCCAAACCACTATGAAGACTACGTACATCGTGTTGGGCGCACTGGTCGTGCTGGCCGGAAAGGTTGTGCCATCACATTTATTTCGGAAGAAGATGCAAGATATGCACCAGATCTGGTGAAAGCATTGGAGCTATCTGAGCAGATTGTTCCCGATGATCTGAAATCCCTTGCCGCTGGCTTTATGGTGAAAGTGACTCAAGGACTGGAGCAAGCCCATGGGACTGGTTATGGAGGCAGTGGCTTTAAATTTAATGAAGAAGAAGATGAGGAAAGGAAAGCAGCAAAGAAAGCTCAAGCCAAAGAATATGGATTTGAAGAAGACAAGTCAGATTCTGAAGACGAAGATGACGGTATTAGGAAGGCAGGAGGTGATATCTCACAGCACCCTGCTCTTGCTCAGATTATTGCTGCGACAAAAGCAAATGCTCCCTCAATGTCTACTCCCATCTCTGCAACCCAACTGATTTCAAATGGTGGGCTACCTGTTTCTTTGCCTTCTGTTCTTGGTCTCCAGACTGCAACAGTCTTGCCTGGAACAGGACTACCCCTTGCTACAAACGACGGGGCAGCTCGAGCTGCACTAGCTGCTATAAACCTGCAGCACAACTTGGCAAAAATACAATCTGAAGCATTGCCAGAGCATTATGAGGCCGAGCTGGAAATAAATGATTTCCCTCAGAATGCTCGCTGGAAAGTCACACACAAGGAAACTTTAGGCCCCATTTCGGAGTGGACCGGAGCTGCTATTACCACCAGGGGACAGTATTTCCCACCTGGCAAAGTCGCAGGACCTGGGGATCGCAAACTCTATTTGTTCATTGAGGGTCCTAGTGAGCAGTCAGTTAAAAGAGCCAAAGTAGAATTGAAGCGTGTTTTGGAAGACATCACTAATCAGGCTTTGCAACTACCTGGTGGAACTCAACCAGGCAAATACTCTGTTGTATAA 3492 0.4381 MDEVKHKSRKEDGDSKRSHRDRDRTGERGKDKDRSEGRHKDNREKRDRESRRHDREKSSDSDDKHDREREKRRDVKEKDRVRVHEVEREKVRDRKRERDREEKEKERVREKERDREEKEKERVREREDKEKERLKEKERERERKEEKERIREKERVRERRDHEREKEKEKEKERDRDKGRRGREREKHRDVDSENSDGELRERNRKRHKKEDEDYKGREKEKSSSKSNRKIEGIDGSPRRKSDGDDSDSKDREKKPTREEEMEDEQRRLDDEMEKRRRRVQEWQELRRKKEEAEREKQGEASAAELESGKAWTLEGEESDDEDGTGKHTAMDVDEDEKPADKEPMESMVVDVDNGTVAPDLQNGDIGAPSDEEIDPLDAFMNSMVLPEVEKLNNTVNSTPSDITSDLKPQDKGDGRSNGRQSRKGSGKSIGRIIPGEESDSDYADPETDGDPVEEDDDEFMKRVKKTKVEKLSLVDHSKIDYIPFKKNFYIEVKEISKMTLEEVALYRKQLELKIHGKDVPKPIKSWNQTGLTSKILDTIKKANFEKPMPIQAQALPVIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVLAGDGPIGLIMAPTRELVQQIHSDIKKFTKVMGIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEMQVGGRSVVNKDIAQLVEVRPENERFLRLLELLGEWYEKGKILIFVHSQEKCDSLFKDLLRHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLVATSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARYAPDLVKALELSEQIVPDDLKSLAAGFMVKVTQGLEQAHGTGYGGSGFKFNEEEDEERKAAKKAQAKEYGFEEDKSDSEDEDDGIRKAGGDISQHPALAQIIAATKANAPSMSTPISATQLISNGGLPVSLPSVLGLQTATVLPGTGLPLATNDGAARAALAAINLQHNLAKIQSEALPEHYEAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQYFPPGKVAGPGDRKLYLFIEGPSEQSVKRAKVELKRVLEDITNQALQLPGGTQPGKYSVV 1163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08746 1163 MobiDBLite consensus disorder prediction 355 374 - -
Vivi1g08746 1163 MobiDBLite consensus disorder prediction 311 347 - -
Vivi1g08746 1163 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 680 688 IPR000629 -
Vivi1g08746 1163 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 556 734 IPR014001 -
Vivi1g08746 1163 Coils Coil 259 303 - -
Vivi1g08746 1163 CDD KH-I_AtRH42_like 1061 1162 - -
Vivi1g08746 1163 Pfam DEAD/DEAH box helicase 550 721 IPR011545 GO:0003676|GO:0005524
Vivi1g08746 1163 MobiDBLite consensus disorder prediction 924 973 - -
Vivi1g08746 1163 Pfam Helicase conserved C-terminal domain 759 867 IPR001650 -
Vivi1g08746 1163 CDD SF2_C_DEAD 746 876 - -
Vivi1g08746 1163 MobiDBLite consensus disorder prediction 1 303 - -
Vivi1g08746 1163 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 525 553 IPR014014 GO:0003724
Vivi1g08746 1163 MobiDBLite consensus disorder prediction 931 955 - -
Vivi1g08746 1163 MobiDBLite consensus disorder prediction 407 421 - -
Vivi1g08746 1163 MobiDBLite consensus disorder prediction 1 347 - -
Vivi1g08746 1163 MobiDBLite consensus disorder prediction 391 459 - -
Vivi1g08746 1163 Gene3D - 478 735 IPR027417 -
Vivi1g08746 1163 FunFam probable ATP-dependent RNA helicase DDX17 487 737 - -
Vivi1g08746 1163 MobiDBLite consensus disorder prediction 440 456 - -
Vivi1g08746 1163 PANTHER RNA HELICASE 473 935 - -
Vivi1g08746 1163 Gene3D - 736 909 IPR027417 -
Vivi1g08746 1163 SMART helicmild6 786 867 IPR001650 -
Vivi1g08746 1163 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 597 883 IPR027417 -
Vivi1g08746 1163 Coils Coil 84 173 - -
Vivi1g08746 1163 CDD DEADc_DDX46 514 735 - -
Vivi1g08746 1163 MobiDBLite consensus disorder prediction 391 406 - -
Vivi1g08746 1163 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 762 906 IPR001650 -
Vivi1g08746 1163 SMART ultradead3 544 749 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08746 Vivi-Chr1 250492183 250496459 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08746 512 887 Eukaryotic Initiation Factors Gene Family AT3G19760 32.632 4.94e-58 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08746 K12811 - gmx:100784306 1572.76