Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08743 ATGAATTTTGTTCTTGTTTTTCCTTTCTTTCTATGTCTCAACATCATGATGAGTGTCTCAGCAGCTCCTACTCCTTCTCCATCATCTTCATCATCATCATCATCATCACCATGTCCTATGGATCTTAACTATGTCCTAAGAATCCATTGGAACTCATCTTCTTGTCAAAACCTGAAGCCTCTAGAATCAAACACAAGCAATTGTTGCATATCACTTTTGTCTCTCTTTGGAATAGGCTTAGCCCAACATCTAAAAGAAACCTCACAGTTCAATCTACAAGACCTTCAAACTTCACTTTCATGCATGAAAGATTTTCAAACAAAGCTCAATTCTTTATCACTTTCAAACACCCTGGTCAACTCTTGTTTCGACCCTCTTCAGTTTGTTATCTCACCTCACATATGTGCAGGGATTGAAACTGTCCATGATTGGAATCAGAAGTTGGGTCAGAACACCACTCTCAACACTGCTTGTAAGCCAGATCTGACTGATCTCTCTCAGTGTGATGTTTGTTTGGCTGCTGGTTTACAGGTTAAGCAGAAGCTTGTTTCTATTGATGGTAATTCTTCTCACTCGTTGGATTGTTTCTACTTTGCTATTCTTTATGCTGCTGGGATTGTGAATGAGTTTGGACCTGAGAGTAATGGTGCTGTTACTTGTGCTTTTAGTTTACCTGTTTATACGCAAACTGGTTCGGGTTCGAAGAGTCGTCAGGGGCTAGTTTTCGGGTTAACCGGAGCTGGCGTTGCGTTGTTTGTTATGAGTTCTTTGTTGGGTTTATATGTTTGGTATGATAGGAAACGTGTGAGGGAGAGGAAGCTTGAAACTTTTCAATTTGATTTTGATCCTGAGGAGCAAGGGTCTAGAAGAAGGTTGAGGCCGAATACCGGGTCGATTTGGTACAAAATTCAGGAACTTGAGAAGGCTACTGATAACTTTTCATCCAAGAATTTCATAGGGAGAGGTGGGTTTGGTTTGGTTTTCAAAGGAACTTTGGCTGATGGATCTGTTGTTGCGGTTAAGCGGGTTTTGGAATCGGATTTTCAAGGCGATGCCGAGTTTTGTAATGAGGTTGAGATTATTAGTAATCTTAAGCATAGGAATTTGTTGCCTCTTAGAGGCTGTTGTGTGGTTGATGAGAGTGAGAATTATGGTGATAGAGGAAGTCAAAGGTATCTTGTTTACGATTACATGCCGAATGGAAACCTCGAAGATCATCTTTTTGTGTCGAAGGATTCTTCGAAACCGAACAAATCGTTGACTTGGCCTCTAAGGAAGAACATAATCTTGGATGTGGCAAAAGGGTTGGCTTATTTGCATTATGGAGTTAAGCCTGCAATTTATCATAGGGATATCAAAGCTACTAATATTCTACTTGATGAAGATATGAGGGCTAGAGTTGCTGATTTCGGACTCGCGAAACAAAGCAGGGAGGGTCAGTCTCATCTCACTACTAGGGTGGCGGGGACTCACGGTTATTTAGCGCCGGAGTACGCGCTTTATGGTCAACTGACCGAGAAGAGTGATGTGTATAGCTTTGGCGTCGTTGTTTTGGAGATAATGTGTGGGAGGAAGGCTCTTGATTTGTCTTCGTCGGGATCGCCACGGGCGTTCTTGATTACGGATTGGGCTTGGTCGTTGGTGAAATCGGGGAAAATAGACCAGGCTTTGGATGGTTCTCTTTTGAAAGACGAAAACAATACTAGTTCGAATCCGAAGAGCATAATGGAAAGGTTTTTGCTGGTTGGAATTCTGTGTTCTCATGTAATGGTCGCTTTGAGACCGACGATTTCAGACGCTTTGAAGATGTTGGAAGGCGATATCGAAGTTCCTCAAATTCCAGACAGGCCTATGCCTCTTGGACATCCTTCGTTTTATAATAACGAATCCATCGGCAACACTTTTAGCATTTCTCCGGCGTTAAGCGGCCTCAAATTGCCCGCGGGAGACATGCTCAGGTCAATTAGTGAGAGATGA 1977 0.4249 MNFVLVFPFFLCLNIMMSVSAAPTPSPSSSSSSSSSPCPMDLNYVLRIHWNSSSCQNLKPLESNTSNCCISLLSLFGIGLAQHLKETSQFNLQDLQTSLSCMKDFQTKLNSLSLSNTLVNSCFDPLQFVISPHICAGIETVHDWNQKLGQNTTLNTACKPDLTDLSQCDVCLAAGLQVKQKLVSIDGNSSHSLDCFYFAILYAAGIVNEFGPESNGAVTCAFSLPVYTQTGSGSKSRQGLVFGLTGAGVALFVMSSLLGLYVWYDRKRVRERKLETFQFDFDPEEQGSRRRLRPNTGSIWYKIQELEKATDNFSSKNFIGRGGFGLVFKGTLADGSVVAVKRVLESDFQGDAEFCNEVEIISNLKHRNLLPLRGCCVVDESENYGDRGSQRYLVYDYMPNGNLEDHLFVSKDSSKPNKSLTWPLRKNIILDVAKGLAYLHYGVKPAIYHRDIKATNILLDEDMRARVADFGLAKQSREGQSHLTTRVAGTHGYLAPEYALYGQLTEKSDVYSFGVVVLEIMCGRKALDLSSSGSPRAFLITDWAWSLVKSGKIDQALDGSLLKDENNTSSNPKSIMERFLLVGILCSHVMVALRPTISDALKMLEGDIEVPQIPDRPMPLGHPSFYNNESIGNTFSISPALSGLKLPAGDMLRSISER 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08743 658 ProSiteProfiles Protein kinase domain profile. 313 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g08743 658 SUPERFAMILY Protein kinase-like (PK-like) 294 605 IPR011009 -
Vivi1g08743 658 PANTHER OS01G0750732 PROTEIN 60 612 - -
Vivi1g08743 658 ProSitePatterns Protein kinases ATP-binding region signature. 319 341 IPR017441 GO:0005524
Vivi1g08743 658 Pfam SPARK 33 196 IPR043891 -
Vivi1g08743 658 ProSitePatterns Serine/Threonine protein kinases active-site signature. 447 459 IPR008271 GO:0004672|GO:0006468
Vivi1g08743 658 Pfam Protein kinase domain 315 533 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g08743 658 CDD STKc_IRAK 319 606 - -
Vivi1g08743 658 Gene3D Phosphorylase Kinase; domain 1 284 397 - -
Vivi1g08743 658 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 398 612 - -
Vivi1g08743 658 FunFam probable receptor-like protein kinase At1g11050 276 397 - -
Vivi1g08743 658 SMART serkin_6 313 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g08743 658 Gene3D Transferase(Phosphotransferase) domain 1 398 612 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08743 Vivi-Chr1 250384041 250387113 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08743 31 653 Receptor kinase-like Gene Family AT1G11050 64.103 0.0 793
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Vivi1g08743 Pkinase 4.9e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08743 - - gmx:100806560 1031.17