Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08732 ATGTCCCTCACGGGCCGGCCTCGTGTTATCGTCAACGGTGTTCGAAGAATGAGAACCTTTCATTATTTCTGGTGTCTCAACTGCCAACGTACTGTCAGAATACCATCAACTAATACTTTTACAGATTATGGCTCTTTCTGTCCATATTGCTTCCATCAATTGCGATATGAACTTGATATATCAAGGCCAAGGCTTCTCATGAATGATCCTAATAACATGAACCCTCCTCCTACTACTAATCAGTTAATGGGTAGCTTAGCTTTCATTCTTGATCCATCTTTTAGAAGACAAAACAACACAACATTACAGTGGGAAACCGAACATGAACATGATCAAAATCAAAATCGGAATCCACAAACATGGATTACACTTCGATTCGTAAGACCAATTCGTCTACCAAGGCCTATTGTTCCACCGCCACCGCCACCACCACAAAACTTGGTTCCTCGACTCAACGACAATAACACCCCTTCATTAGATGAGCTCTTTGATGGGATGATTCACAACAATAGTAGACCAGGGCCGCCTCCTGCGTCACCGTCGGCCATTGAAGCCTTACCAATGGTGAAAGTGACAGAAGCTCATTTGGCAAGTGACCCGAATTGTCCAATATGTAAAGATGAGTTTGAAGTTGATTTAGAAGTGAAAGAGTTACCATGCAAACATTTCTACCATTCTGACTGCATTCTCCCGTGGCTTCGCATGCACAACACTTGCCCTGTATGCCGCCACGAGCTACAAGGGATTGATAATAGTAACAATGCTAATTACTACTCTTTTCACAATGAAAATGAGTACGACGTCGGATTCATTGGATTTGAGGAACTTACAAGCAGCTTTATCTGGATTTGGAGCCAATTTACTTCGATTTGGCCTATCCGTGCAGTCCTAGATTGGACGCGGTCCCGTTTCAATCACCATGCCCAAGCTCGTAGTAGAAGTAACTCTTGGTGGCGAGCATTGCTCATTCCGTAG 975 0.4359 MSLTGRPRVIVNGVRRMRTFHYFWCLNCQRTVRIPSTNTFTDYGSFCPYCFHQLRYELDISRPRLLMNDPNNMNPPPTTNQLMGSLAFILDPSFRRQNNTTLQWETEHEHDQNQNRNPQTWITLRFVRPIRLPRPIVPPPPPPPQNLVPRLNDNNTPSLDELFDGMIHNNSRPGPPPASPSAIEALPMVKVTEAHLASDPNCPICKDEFEVDLEVKELPCKHFYHSDCILPWLRMHNTCPVCRHELQGIDNSNNANYYSFHNENEYDVGFIGFEELTSSFIWIWSQFTSIWPIRAVLDWTRSRFNHHAQARSRSNSWWRALLIP 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08732 324 ProSiteProfiles Zinc finger RING-type profile. 202 243 IPR001841 -
Vivi1g08732 324 SMART ring_2 202 242 IPR001841 -
Vivi1g08732 324 Pfam Ring finger domain 201 243 IPR001841 -
Vivi1g08732 324 FunFam E3 ubiquitin-protein ligase RING1-like 166 248 - -
Vivi1g08732 324 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 165 248 IPR013083 -
Vivi1g08732 324 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 112 246 - -
Vivi1g08732 324 CDD RING-H2_RNF126-like 201 243 - -
Vivi1g08732 324 SUPERFAMILY RING/U-box 182 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08732 Vivi-Chr1 250238842 250240499 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08732 1 300 C3H Transcription Factor Family AT1G68180 33.775 8.32e-42 143