Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08701 ATGTCATTCCGTAGCATAGTTCGTGATGTTCGTGATAGTTTCGGGAGCTTATCTAGGCGTAGTTTTGATGTCAAACTTACCGGTCATCATCATAGAGGAAAATCTCATGGTTCGGTACAGGATTTGCACGATCAGCCTCTTGTAATTCAAAATAGTTGCTGGGCGAGCTTACCCCCAGAATTACTTTTCGACGTCATTCGACGGCTAGAGGAGAGTGAGAATACGTGGCCTTCACGAAAGCATGTAGTTGCTTGTGCTTCTGTTTGCCAGTCTTGGAGGAATATGTGCAAGGACATCGTTAAGAGTCCTGAGTTCTGCGGCAAACTTACGTTCCCCGTGTCCCTGAAGCAGCCCGGGCCGCGAGATGGAATCATTCAATGCTTTATCAAAAGAGATAAATCTAACTTAACATACCACCTATTCCTTTGTCTGAGCCCCGCTTTGTTAGTCGAAAATGGAAAATTCCTCCTCTCTGCTAAGAGGACAAGGAGAACAACCTACACTGAGTATGTTATTTCCATGGATGCTGACAACATCTCCCGATCAAGTAATACTTACATCGGAAAGCTTAGATCAAACTTTCTCGGAACGAAATTCATTATATATGACACACAGCCTCCCCACACTTCTGCCCATATATGTCCACCGGGGATTGGGAAGACGAGCCGCAGATTTTCCAAAAAGGTATCGCCTAAGGTCCCATCCGGGAGTTACAACATAGCTCAGGTAACATATGAACTGAACGTTCTCGGCACTCGAGGCCCAAGAAAGATGCACTGCATTATGCATTCAATACCAAATTCAGCACTTGATGCCGGCGGATCCGTTCCCGGACAGCCCGAGCTTATTCCCCGTTCCCTGGAGGACTCATTCCGTAGCATCTCGTTTTCAAAGTCCCTAGATCATTCCATCGAGTTCAGCAGTTCACGGTTTTCCGAGATCGGAGGATCATGCAACGAGGACGACGACGGCAAGGCAAGACCCTTAGTTCTGAAAAACAAGCCTCCAAGATGGCACGAACAACTCCAGTGCTGGTGCCTGAATTTCCGGGGCCGAGTAACTGTCGCATCTGTTAAAAACTTTCAGCTGATCGCATCCACCCAACCACCTGCTGGCGCGCCGACGCCATCTCAACCAGCTCCATCGGAACATGATAAGATTATTCTACAATTCGGCAAAGTCGGGAAAGATATGTTCACCATGGATTATCGGTATCCGTTATCCGCATTCCAAGCTTTCGCGATATGCTTGAGCAGCTTTGACACCAAGCTGGCTTGTGAATAA 1284 0.4735 MSFRSIVRDVRDSFGSLSRRSFDVKLTGHHHRGKSHGSVQDLHDQPLVIQNSCWASLPPELLFDVIRRLEESENTWPSRKHVVACASVCQSWRNMCKDIVKSPEFCGKLTFPVSLKQPGPRDGIIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTYTEYVISMDADNISRSSNTYIGKLRSNFLGTKFIIYDTQPPHTSAHICPPGIGKTSRRFSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRKMHCIMHSIPNSALDAGGSVPGQPELIPRSLEDSFRSISFSKSLDHSIEFSSSRFSEIGGSCNEDDDGKARPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIASTQPPAGAPTPSQPAPSEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08701 427 CDD F-box_AtTLP-like 54 98 - -
Vivi1g08701 427 SUPERFAMILY Tubby C-terminal domain-like 103 427 IPR025659 -
Vivi1g08701 427 FunFam Tubby-like F-box protein 49 102 - -
Vivi1g08701 427 Gene3D Tubby Protein; Chain A 113 421 IPR025659 -
Vivi1g08701 427 PRINTS Tubby superfamily signature 384 403 IPR000007 -
Vivi1g08701 427 PRINTS Tubby superfamily signature 331 348 IPR000007 -
Vivi1g08701 427 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Vivi1g08701 427 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Vivi1g08701 427 PRINTS Tubby superfamily signature 349 365 IPR000007 -
Vivi1g08701 427 PRINTS Tubby superfamily signature 237 264 IPR000007 -
Vivi1g08701 427 PRINTS Tubby superfamily signature 405 427 IPR000007 -
Vivi1g08701 427 FunFam Tubby-like F-box protein 111 427 - -
Vivi1g08701 427 Gene3D - 49 101 - -
Vivi1g08701 427 Pfam Tub family 115 422 IPR000007 -
Vivi1g08701 427 ProSitePatterns Tub family signature 2. 412 427 IPR018066 -
Vivi1g08701 427 PANTHER TUBBY-RELATED 27 425 - -
Vivi1g08701 427 Pfam F-box domain 54 101 IPR001810 GO:0005515
Vivi1g08701 427 SUPERFAMILY F-box domain 50 98 IPR036047 GO:0005515
Vivi1g08701 427 ProSitePatterns Tub family signature 1. 349 362 IPR018066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08701 Vivi-Chr1 249691646 249695119 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08701 1 427 TUB Transcription Factor Family AT1G76900 70.435 0.0 612
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Vivi1g08701 Tub 2e-116 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08701 K19600 - gmx:100814578 810.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g08701 1 249691646 249695119 Vivi1g08701 1 249691646 249695119 ECH