Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08687 ATGTCTGATTCGGATGAGTTTCGTTGCTTCATTGGTGGCCTTGCATGGTCAACCTCGGATAGAAAGTTAAAGGAAGCATTTGAAAAGTATGGCAAGCTTCTTGAGGCTAAGGTTGTGGTTGACAAGTTCTCTGGGCGCTCTCGTGGTTTTGGGTTTGTCACCTTTGATGACAAGGAAGCCATGGAAGAGGCTATTGAGGCCATGAATGGAATTGACTTGGATGGTCGAACTATTACTGTAGATAAAGCCCAACCTCAAGGAAATAGAGACGATGATGATCGTCGAGGTGGTCGTGACTCACGTGATCGCAATCGTGGCCGAGATTATGGAGGTGGTCGAGGGTCTAATGGTGGTGAATGCTTCAAGTGTGGTAAACCTGGTCATTTTGCAAGAGAATGTCCTAGTGAAGGAGGAGAAAGAGGGGGAAGATATGGTGGCCGAGAAAGTAGATATAGTGGTGGCTATGGTCCTGAAAGGAATGGCGGTGGTCGCGACCGTGATGGTGGCGGTCGTGACAGGGATGGCGGTGGACGTGACAGGGATGGTGGTCGTGACAGGGATGGTGGTGGACGTGATAGAGATGGTGGTGGACGTGACAGGGATGGTGGCGGTCGTGACAGGGATCGTGCTGGACCGTATGAGCGTCGTGGATCGTCAGGAGGTTATCGTTGA 672 0.5104 MSDSDEFRCFIGGLAWSTSDRKLKEAFEKYGKLLEAKVVVDKFSGRSRGFGFVTFDDKEAMEEAIEAMNGIDLDGRTITVDKAQPQGNRDDDDRRGGRDSRDRNRGRDYGGGRGSNGGECFKCGKPGHFARECPSEGGERGGRYGGRESRYSGGYGPERNGGGRDRDGGGRDRDGGGRDRDGGRDRDGGGRDRDGGGRDRDGGGRDRDRAGPYERRGSSGGYR 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08687 223 SUPERFAMILY Retrovirus zinc finger-like domains 112 137 IPR036875 GO:0003676|GO:0008270
Vivi1g08687 223 CDD RRM2_NsCP33_like 8 83 - -
Vivi1g08687 223 Pfam Zinc knuckle 119 135 IPR001878 GO:0003676|GO:0008270
Vivi1g08687 223 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Vivi1g08687 223 Gene3D - 116 171 - -
Vivi1g08687 223 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 1 217 - -
Vivi1g08687 223 ProSiteProfiles Zinc finger CCHC-type profile. 120 135 IPR001878 GO:0003676|GO:0008270
Vivi1g08687 223 SMART rrm1_1 8 81 IPR000504 GO:0003723
Vivi1g08687 223 MobiDBLite consensus disorder prediction 132 146 - -
Vivi1g08687 223 SUPERFAMILY RNA-binding domain, RBD 3 117 IPR035979 GO:0003676
Vivi1g08687 223 Gene3D - 2 115 IPR012677 -
Vivi1g08687 223 MobiDBLite consensus disorder prediction 85 109 - -
Vivi1g08687 223 SMART c2hcfinal6 119 135 IPR001878 GO:0003676|GO:0008270
Vivi1g08687 223 MobiDBLite consensus disorder prediction 160 214 - -
Vivi1g08687 223 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 79 IPR000504 GO:0003723
Vivi1g08687 223 MobiDBLite consensus disorder prediction 76 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08687 Vivi-Chr1 249124345 249126369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08687 9 95 Eukaryotic Initiation Factors Gene Family AT1G71770 40.230 3.12e-11 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08687 - - tpra:123908224 257.299