Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08681 ATGGTTAATGTTCCGAAGACCAAGAAGACCTACTGCAAGAACAAGGAATGCAAGAAGCATACACTTCACAAGGTCACCCAATACAAGAAGGGTAAGGACAGTATCGCCGCTCAAGGAAAGCGTCGTTACGATCGGAAACAGTCCGGTTATGGTGGCCAGACTAAGCCTGTCTTCCACAAGAAGGCTAAAACCACTAAGAAGATTGTTCTGAGGTTGCAATGCCAGAGTTGCAAACATGTTTCTCAGCATGCCATTAAGAGGTGCAAGCACTTTGAGATTGGTGGAGACAAGAAGGGAAAAGGAACATCTCTCTTCTAG 318 0.456 MVNVPKTKKTYCKNKECKKHTLHKVTQYKKGKDSIAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQSCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08681 105 PANTHER 60S RIBOSOMAL PROTEIN L36A/L44 1 105 IPR000552 GO:0003735|GO:0005840|GO:0006412
Vivi1g08681 105 MobiDBLite consensus disorder prediction 28 62 - -
Vivi1g08681 105 FunFam 60S ribosomal protein L44 1 105 - -
Vivi1g08681 105 Pfam Ribosomal protein L44 19 94 IPR000552 GO:0003735|GO:0005840|GO:0006412
Vivi1g08681 105 ProSitePatterns Ribosomal protein L44e signature. 63 74 IPR000552 GO:0003735|GO:0005840|GO:0006412
Vivi1g08681 105 Gene3D - 1 105 - -
Vivi1g08681 105 SUPERFAMILY Zn-binding ribosomal proteins 2 94 IPR011332 GO:0006412
Vivi1g08681 105 MobiDBLite consensus disorder prediction 28 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08681 Vivi-Chr1 248957916 248958876 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08681 1 105 Cytoplasmic Ribosomal Protein Gene Family AT3G23390 94.286 4.98e-69 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08681 K02929 - cave:132178558 214.157