Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08667 ATGGAGGAAAGAGTGATTTTATCGTCTTCTAAACCTTTCTTTCTTTTTTGGGCAATTATGGTGTTTCATTTTCTGCTTAAAGCTTCTTCAAATCCAGAAGGTGATGCACTGATTACATTGAAGAGGAACTTGAAGGATCCTAATAATGTTCTTCAAGATTGGGATGCTACACTTCCAAATCCATGCACATGGTTTCATGTTACGTGCAATCAACATAACAGCGTGATCGCCGTTGATCTTGGAAATCAGGACCTTTCTGGTACATTGGTTTCAAGCCTTGGTCATCTCTCCAATTTGCAGTACTTAGAACTTTATAATAATAGTATAACAGGTAAAATCCCAGAAGAGCTAGGAAATTTGGCAAACTTGGTTAGCTTGGATCTTTACTTGAACAATATAAGTGGTACTATACCCAATACATTCGGCAAACTTCAAAAACTACGTTTCCTGCGTCTCAATAATAACATGTTGAGTGGCCGCATTCCCGTGTCTTTGACAAATGTTTCTACGCTGCAAGTTCTTGATCTCTCAAACAACAATCTAGAAGGGGATGTTCCAGTGAATAGTTCATTTTCATCATTTACCTATGTCAATTATCAAAATAATCCTCATTTGCAACTACCAAAAATCATTCCTGTGCCGCCTTCTCCACCATCACCAGCTTCTTCAGGTAGCGAAAATACTGGAGCTATTGCAGGAGGAGTTGCTGCTGGTGCTACTCTGTTGTTTGCTGCCCCTGCAATTGCACTTGCTTACTGGAGAAAAAGAAAACCACTCGATCACTTCTTTGATGTTCCTGGTGAGGAGCATCCTGAAGTTCGCCTTCGCCTTGGTCTGCCTAACAGGTTTTCCTGGCGCGAGCTGCTAGTAGCGACAGATAACTTCAGTAACAAAAATATAATAGGCAGAGGTGGATTCGGAAAAGTATATAAAGGACGTTTAGCTGATGGCACCCTTGTAGCAGTAAAAAGACTTAAAGAGGAGAGGACACAGAGTGGGGAGCTACAATTTCAAAGAGAAGTTGAAATGATCAGTATGGCTGTGCATCGCAATTTGCTCCGGCTTCGTGGTTTTTGCATAACATCTACTGAACGTTTGCTTGTGTATCCTTATATGGCCAATGGAAGTGTTGCATCATGTTTACGAGAACGTAGTGAATCTGATCCGCCACTTGAGTGGCCGATACGGAAGAATATTGCGCTGGGATCTGCCAGAGGGCTTGCTTACTTGCATGATCATTGTGACCCTAAGATTATTCATCGTGATGTGAAAGCTGCAAATATATTGTTGGATGAGAACTTTGAAGCAGTTGTTGGAGATTTCGGTTTAGCAAAGCTTATGAGTTACAAAGATACACATGTTACTACTGCTGTTCGTGGTACGATTGGGCATATATCACCTGAGTACCTGTCAACTGGAAAGATTTCAGAAAAGACAGATGTTTTTGGATATGGTGTGATGCTTCTTGAACTAATAACAGGACAGAGGGCTTTTGATCTAGCAAAACTTGCCAATGATGACGATGTAAAAAACTGA 1536 0.4095 MEERVILSSSKPFFLFWAIMVFHFLLKASSNPEGDALITLKRNLKDPNNVLQDWDATLPNPCTWFHVTCNQHNSVIAVDLGNQDLSGTLVSSLGHLSNLQYLELYNNSITGKIPEELGNLANLVSLDLYLNNISGTIPNTFGKLQKLRFLRLNNNMLSGRIPVSLTNVSTLQVLDLSNNNLEGDVPVNSSFSSFTYVNYQNNPHLQLPKIIPVPPSPPSPASSGSENTGAIAGGVAAGATLLFAAPAIALAYWRKRKPLDHFFDVPGEEHPEVRLRLGLPNRFSWRELLVATDNFSNKNIIGRGGFGKVYKGRLADGTLVAVKRLKEERTQSGELQFQREVEMISMAVHRNLLRLRGFCITSTERLLVYPYMANGSVASCLRERSESDPPLEWPIRKNIALGSARGLAYLHDHCDPKIIHRDVKAANILLDENFEAVVGDFGLAKLMSYKDTHVTTAVRGTIGHISPEYLSTGKISEKTDVFGYGVMLLELITGQRAFDLAKLANDDDVKN 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08667 511 Pfam Protein kinase domain 296 499 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g08667 511 Gene3D Transferase(Phosphotransferase) domain 1 372 511 - -
Vivi1g08667 511 SUPERFAMILY Protein kinase-like (PK-like) 275 501 IPR011009 -
Vivi1g08667 511 ProSitePatterns Protein kinases ATP-binding region signature. 301 323 IPR017441 GO:0005524
Vivi1g08667 511 FunFam Somatic embryogenesis receptor kinase 1 29 216 - -
Vivi1g08667 511 FunFam Somatic embryogenesis receptor kinase 1 262 371 - -
Vivi1g08667 511 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 13 502 - -
Vivi1g08667 511 ProSitePatterns Serine/Threonine protein kinases active-site signature. 418 430 IPR008271 GO:0004672|GO:0006468
Vivi1g08667 511 Pfam Leucine Rich Repeat 98 120 IPR001611 GO:0005515
Vivi1g08667 511 Pfam Leucine Rich Repeat 171 189 IPR001611 GO:0005515
Vivi1g08667 511 Gene3D Ribonuclease Inhibitor 30 210 IPR032675 -
Vivi1g08667 511 FunFam Protein NSP-INTERACTING KINASE 1 372 511 - -
Vivi1g08667 511 SUPERFAMILY L domain-like 31 207 - -
Vivi1g08667 511 Gene3D Phosphorylase Kinase; domain 1 262 371 - -
Vivi1g08667 511 ProSiteProfiles Protein kinase domain profile. 295 511 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g08667 511 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Vivi1g08667 511 SMART serkin_6 295 510 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08667 Vivi-Chr1 248618480 248622276 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08667 1 509 Receptor kinase-like Gene Family AT4G33430 70.377 0.0 713
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vivi1g08667 Pkinase 2.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08667 K13416 - gmx:100800522 771.155