Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08666 ATGAAGGAAAGACTGATTTCATCATCTTCTAAACCTACCTTTCTTTTTTGGGCAATTATGTTGTTTCATTTGCTGCTTAAAGCTTCTTCCAATCCAGAAGGTGATGCACTGAATACATTGAAGAGGAACTTGAAGGATCCTAATAATGTTCTTCAAGATTGGGATGCTACACTTCCTAATCCCTGCACTTGGTTTCATGTTACATGCAATGAACATAACAGCGTGATCGCCATTGATCTTGGAAATCAGGACCTTTCTGGTACACTGGTTTCAAACCTTGGCGGTCTCTCCAATTTGCAGTACTTGGAACTTTATAATAATAGTATAACAGGTAAAATCCCAGAAGAGCTAGGAAATTTGGCAAACTTGGTGAGCTTGGATCTTTACTTGAACAATATAAGTGGTACTATACCCAATACATTTGGCAAACTTCAAAAACTACGTTTCCTGCGTCTCAATAATAACATGTTGAGTGGCCGCATTCCCGTGTCTTTGACAAATGTTTCTACGCTGCAAGTTCTTGATCTCTCAAACAACAATCTTGAAGGGGATGTTCCAGTGAATGGTTCATTTTCATCATTTACCTATGTCAATTATCAAAATAATCCTCATTTGCAACTACCAAAAATCATTCCTGTGCCACCTTCTCCACCATCACCAGCTTCTTCAGGTAGCGAAAATACTGGAGCTATTGCAGGAGGAGTTGCTGCTGGTGCTACTCTGTTGTTTGCTGCCCCTGCAATTGCACTTGCTTACTGGAGAAAAAGAAAACCACTCGATCATTTCTTTGATGTTCCTGGTGAGGAGCATCCTGAAGTTCGCCTTCGCCTTGGTCTGCCTAACAGGTTTTCCTGGCGCGAGCTGCTAGTAGCGACAGATAAGTTCAGTAACAAAAATATAATAGGCAGAGGTGGATTCGGAAAAGTATATAAAGGACGTTTAGCTGATGGCTCCCTTGTAGCAGTAAAAAGACTTAAAGAGGAAAGGATACAGAATGGGGATCTACAATTTCAAAGAGAAGTTGAAATGATCAGTATGGCTGTGCATCGCAATTTGCTCCGGCTTCGTGGTTTTTGCATAACATCTACTGAACGTTTGCTTGTGTATCCTTATATGGCCAATGGAAGTGTTGCATCATGTTTACGAGAACGTAGTGAATCTGATCCGCCACTTGAGTGGCTGATACGAAAGAATATTGCGCTGGGATCTGCCAGAGGGCTTGCTTACTTGCATGATCATTGTGACCCTAAGATTATTCATCGTGATGTGAAAGCTGCAAATATATTGTTGGATGAGGACTTTGAAGCAGTTGTTGGAGATTTCGGTATAGCAAAGCTTATGGGTTACAAAGATACACATGTTACTACTGCTGTTCGTGGTACGATTGGGCATATATCACCTGAGTACCTGTCAACTGGAAAGATTTCAGAAAAGACAGATGTTTTTGGATATGGTGTGATGCTTCTTGAACTAATAACAGGACAGTGGGCTTTTGATCTAGCAAGACTTGCCAATGATGACGATGTGTTGTTGGTTGATTGGGTTAAAGGACATCTCAATGACAAGAAGTGGGAAACACTTGTAGATGAAGAGTTAAAGGGAAACTGTGATAATGATGAGGTAGAGCAGTTAATCCAAGTGGCTTTACTATGTACACAAGGGTCCCCAATGGAAAGACCAAAGATGTCTGAGGTTTTGAGAATGCTGGAAGGTGATGGTTTGGCAGAAAAATGGGAGCAATGGCAAAAAAAAGAGACAAATCGACAAGAATTTAACAACAACCACATGCATCACCCTAGTGCAAACTGGATACAATTAGATTCAACTGAACGTATCCAGCCATAG 1845 0.4092 MKERLISSSSKPTFLFWAIMLFHLLLKASSNPEGDALNTLKRNLKDPNNVLQDWDATLPNPCTWFHVTCNEHNSVIAIDLGNQDLSGTLVSNLGGLSNLQYLELYNNSITGKIPEELGNLANLVSLDLYLNNISGTIPNTFGKLQKLRFLRLNNNMLSGRIPVSLTNVSTLQVLDLSNNNLEGDVPVNGSFSSFTYVNYQNNPHLQLPKIIPVPPSPPSPASSGSENTGAIAGGVAAGATLLFAAPAIALAYWRKRKPLDHFFDVPGEEHPEVRLRLGLPNRFSWRELLVATDKFSNKNIIGRGGFGKVYKGRLADGSLVAVKRLKEERIQNGDLQFQREVEMISMAVHRNLLRLRGFCITSTERLLVYPYMANGSVASCLRERSESDPPLEWLIRKNIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEDFEAVVGDFGIAKLMGYKDTHVTTAVRGTIGHISPEYLSTGKISEKTDVFGYGVMLLELITGQWAFDLARLANDDDVLLVDWVKGHLNDKKWETLVDEELKGNCDNDEVEQLIQVALLCTQGSPMERPKMSEVLRMLEGDGLAEKWEQWQKKETNRQEFNNNHMHHPSANWIQLDSTERIQP 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08666 614 ProSitePatterns Protein kinases ATP-binding region signature. 301 323 IPR017441 GO:0005524
Vivi1g08666 614 SMART serkin_6 295 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g08666 614 MobiDBLite consensus disorder prediction 590 614 - -
Vivi1g08666 614 ProSitePatterns Serine/Threonine protein kinases active-site signature. 418 430 IPR008271 GO:0004672|GO:0006468
Vivi1g08666 614 Gene3D Phosphorylase Kinase; domain 1 262 371 - -
Vivi1g08666 614 FunFam Somatic embryogenesis receptor kinase 1 262 371 - -
Vivi1g08666 614 Pfam Leucine Rich Repeat 98 120 IPR001611 GO:0005515
Vivi1g08666 614 Pfam Leucine Rich Repeat 171 184 IPR001611 GO:0005515
Vivi1g08666 614 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Vivi1g08666 614 FunFam Somatic embryogenesis receptor kinase 1 29 216 - -
Vivi1g08666 614 Gene3D Ribonuclease Inhibitor 30 210 IPR032675 -
Vivi1g08666 614 Gene3D Transferase(Phosphotransferase) domain 1 372 589 - -
Vivi1g08666 614 SUPERFAMILY L domain-like 31 207 - -
Vivi1g08666 614 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 16 580 - -
Vivi1g08666 614 FunFam Somatic embryogenesis receptor-like kinase 1 372 589 - -
Vivi1g08666 614 ProSiteProfiles Protein kinase domain profile. 295 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g08666 614 Pfam Protein kinase domain 296 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g08666 614 MobiDBLite consensus disorder prediction 593 614 - -
Vivi1g08666 614 SUPERFAMILY Protein kinase-like (PK-like) 275 570 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08666 Vivi-Chr1 248610169 248614744 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08666 1 613 Receptor kinase-like Gene Family AT4G33430 68.684 0.0 835
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vivi1g08666 Pkinase 1.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08666 K13416 - gmx:100800522 925.235