Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08665 ATGTTTATCCGCATATTGAATCATTATTTTTTGTTGCATTTGGACAGTGATCTTGGAAATCAGGACCTTTCTGGTACACTGGTTTCAAACCTTGGTCATCTCTCCAATTTGCAATACTTGGAACTTTATAATAATCGTATAACAGGTAAAATCCCCGAAGAGCTAGGAAATTTGGCAAACTTGGTGAGCTTGGATCTTTACTTGAACAATATAAGTGGTACTATACCCAATACATTGGGCAAACTTCAAAAACTACGTTTCCTGCGTCTCAATGATAATACTTTGAGTGGCCGTATTCCCGTGTCTTTGACAAATGTTTCTACGCTGCAAGTTCTTGATCTCTCAAACAACAATCTAGAAGGGGATGTTCCAGTGAACGGTTCATTTTCATTATTAACCTTTGTCAATTATCAAAACAATCCTCACTTGAAACTACCAAAAATTATTCCTGAGCCACTTTCTCCACCATCACCAGCTTCTTCAGGTAGCAGTAATACTGGAGCTGTTGCTGGAGGAGTTGCTGCGGGTGCGACTCTGTTGTTTGCAGCCCCTGCAATTGCACTTGCTTGTTGGCGAAAAAGAAAACCACGTGATCAATTCTTTGACGTTCCTGCGGAAGCTGAGGAGCATCCTGAAGTTCACCTTGGTCTGCTTAAAAAGTTTTCTCTACGTGAGCTGCTTGTAGCGACAGATAACTTCAGTGAAAAAAATTTCCTAGGTTGGGGTGGATTTGCAAAGGTTTATAAAGGACGTTTAGCTGATGGCACTCTTGTAGCAGTAAAAAGAATTTCTAAGAAACATATACTACATATGGAGCTGGATTTTCAAAGAGAAGTTGAAATGATCAGCATGGCTGTGCATCGTAACATACTCCGGCTTCGTGGTTTTTGCATGACGTCTACTGAACGCTTGCTTGTGAGTCCTTACATGGCCAATGGAAGTCTATTATCACGTTTACGAGAACGAAATGATTCTGAACCGCCGCTTGAGTGGCCAATGCGGAAGAATATCGCCCTGGGATCTGCGATGGGGCTTGCTTACTTGCATGATCATTGTGACCCTAAGATTATTCATCGTGATGTGAAACCTGCAAACATATTTTTGGATGAGAACTTCGAAGCTGTTATTGGAGATTTCGGTTTAGCAAAGCTTATGGATTACAAAGACACCCATGTAACATATACTCGGATTTGTGGTACGTTTGGGTATATGGCACCTGAGTACTACATAAATGGAAAGTGTTCAGAAAAGAATGATGTTTTTGGATACGGAGTGACGCTGCTTGAATTAATAACTGGACAGAGGACTTTTGATCGAGGACGTCTTGCCAATGATGATGCTAATATATGGCTACCTAATAAGGTTAAAGGACTTCTCGAAGACAAAAAGTTGGAAACACTTGTAGATGCAGAATTGAAGGGAAATTATGATGTTGATGATATAGAACAGTTAATCCAAGTGAGTTTACTATGCACACAAGAGTCCTCAATGAAAAGACCGAAAATGTCTGAGGTGGTGAGAATGCTAGAAGGTGATGGTTTGGCCAAAAAATGGGAGCAATGGAAGAAAGAAGAGACAAATCGACAAGAATTTAACAATAACGATATGCATAACCGTAATGCAAATTGGATAATAGTAGATTCAACTGAACATATCCTGCCAGATGAACTCTCAGGTCCTAGATGA 1686 0.4021 MFIRILNHYFLLHLDSDLGNQDLSGTLVSNLGHLSNLQYLELYNNRITGKIPEELGNLANLVSLDLYLNNISGTIPNTLGKLQKLRFLRLNDNTLSGRIPVSLTNVSTLQVLDLSNNNLEGDVPVNGSFSLLTFVNYQNNPHLKLPKIIPEPLSPPSPASSGSSNTGAVAGGVAAGATLLFAAPAIALACWRKRKPRDQFFDVPAEAEEHPEVHLGLLKKFSLRELLVATDNFSEKNFLGWGGFAKVYKGRLADGTLVAVKRISKKHILHMELDFQREVEMISMAVHRNILRLRGFCMTSTERLLVSPYMANGSLLSRLRERNDSEPPLEWPMRKNIALGSAMGLAYLHDHCDPKIIHRDVKPANIFLDENFEAVIGDFGLAKLMDYKDTHVTYTRICGTFGYMAPEYYINGKCSEKNDVFGYGVTLLELITGQRTFDRGRLANDDANIWLPNKVKGLLEDKKLETLVDAELKGNYDVDDIEQLIQVSLLCTQESSMKRPKMSEVVRMLEGDGLAKKWEQWKKEETNRQEFNNNDMHNRNANWIIVDSTEHILPDELSGPR 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08665 561 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 17 520 - -
Vivi1g08665 561 ProSitePatterns Protein kinases ATP-binding region signature. 239 261 IPR017441 GO:0005524
Vivi1g08665 561 Pfam Leucine rich repeat 35 95 IPR001611 GO:0005515
Vivi1g08665 561 SUPERFAMILY Protein kinase-like (PK-like) 214 510 IPR011009 -
Vivi1g08665 561 Gene3D Phosphorylase Kinase; domain 1 201 309 - -
Vivi1g08665 561 ProSiteProfiles Protein kinase domain profile. 233 514 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g08665 561 SMART serkin_6 233 509 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g08665 561 Gene3D Transferase(Phosphotransferase) domain 1 310 529 - -
Vivi1g08665 561 FunFam Somatic embryogenesis receptor kinase 1 13 152 - -
Vivi1g08665 561 FunFam Somatic embryogenesis receptor kinase 1 200 309 - -
Vivi1g08665 561 ProSitePatterns Serine/Threonine protein kinases active-site signature. 356 368 IPR008271 GO:0004672|GO:0006468
Vivi1g08665 561 SUPERFAMILY L domain-like 17 151 - -
Vivi1g08665 561 Gene3D Ribonuclease Inhibitor 9 149 IPR032675 -
Vivi1g08665 561 FunFam Somatic embryogenesis receptor-like kinase 1 310 529 - -
Vivi1g08665 561 Pfam Protein kinase domain 234 506 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08665 Vivi-Chr1 248600357 248608831 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08665 17 561 Receptor kinase-like Gene Family AT4G33430 64.924 0.0 689
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vivi1g08665 Pkinase 9.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08665 K13416 - gmx:100800522 739.184