Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08664 ATGAAGGAAAGACTGATTTCATCATCTTCTAATACTTTCTTTCTTTTTTGGGCAATTTCGGTTCTTCATTTGCTGCTTAAAGCTTCTTCCAATCTAGAAGGTGATGCACTGAATGCATTGAAGAGTAACTTGAATGATCCTAACAATGTTCTTCAAAGTTGGGATGCTACCCTTGTCAATCCTTGCACGTGGTTTCATGTTACTTGCAATGGCGATAATAGTGTGACCCGTGTTGATCTTGGAAATGCGGCGCTTTCTGGCACACTGGTTTCAAACCTTGGTGATCTCCCAAATTTGCAGTACCTGGAACTTTATAATAATAATATAACAGGTAAAATCCCAGATGAGCTAGGAAATTTGGCAAACTTGGAGAGTTTGGATCTTTACTTGAACGAAATGAGTGGTGTTATACCTAATACATTGGGCAAGCTTCAAAAACTGCGTTTCCTGCGTCTCAATAATAACAACTTGACGGGCACCATTCCCGTGTCTTTGACAAAAGTTAATACACTGCAAGTTCTTGATCTCTCATTCAACAATCTAGAAGGGGATATTCCAGTGAATGGTTCATTTTCATTATTTACCCCTGTCAGTTATAAGAATAATCCTCACTTGAATAACATAACAATCACTCCTGTGCCAGTTTCTCCATCGCCACCACCTTCTTCAGGTGGCAGTAATACTGGAGCTATTGCTGGAGGAGTTGCTGCTGGTGCTGCTCTGTTGTTTGCTGCCCCTGCAATTGCACTTTCTTATTGGCGAAAAAGAAAACCACATGATAATTTCTTTGACGTTCCTGCTGAGGAGGATCCTGAAGTTCACCTTGGTCAGCTGAAAAGGTTTTCTCTACGTGAGCTGCTAGTAGCGACAGATAACTTCAGTAACAAAAACATTCTAGGTAGAGGTGGATTTGGAAAGGTTTATAAAGGACGCTTAGCTGATGGCGGTCTTGTAGCAGTAAAAAGACTTAAAGAGGAACGCACACAAGGTGGGGAGCTGCAATTTCAAACAGAAGTTGAAATGATCAGCATGGCTGTGCATCGTAATTTGCTCCGGCTTCTTGGTTTTTGCATGACATCTACTGAACGCTTGCTTGTGTATCCTTTCATGTCCAATGGAAGTGTGGCGTCATGTTTACGAGAGCGTAATGATTCTGATCCGCCGCTTGAGTGGCAAAAGCGAAAAAATATTGCGCTGGGATCTGCCAGGGGACTTGCTTACTTGCATGATCATTGTGACCCTAAGATTATTCATCGCGATGTGAAAGCTGCAAATATATTGTTGGATGGGGAATTTGAAGCAGTTGTTGGAGATTTCGGTTTAGCAAAGCTTATGGATTATAAAGATACCCATGTTACTACAGCTGTCCGTGGTACGATTGGGCATATAGCACCTGAGTACCTGTCAACTGGAAAATCTTCAGAAAAGACTGATGTTTTTGGATACGGTGTGATGCTTCTTGAACTAATAACAGGACAGAGAGCTTTTGATCTTGCTCGACTTGCCAATGATGATGATGTGATGTTGCTTGATTGGGTTAAAGGACTTCTGAAAGATAAGAAGTTGGAAACACTTGTAGATGCAGAATTAACGGGAAATTATGACGATGGTGAGGTAGAGCAGTTAATCCAAGTGGCTTTACTATGCACACAAGGGTCTCCGATGGAAAGACCAAAGATGTCTGAGGTGGTGAGAATGCTAGAAGGTGATGGTTTGGCGGAAAAATGGGAGCAATGGCAGAAAGAAGAGACGTACCGACAAGATTTTAACAACAACCCCATGCATCACCCTAATGCAAATTGGATGGTATTAGATTCAGCTTCACATATCCAGGCAGATGAACTCTCAGGTCCTAGATGA 1860 0.4188 MKERLISSSSNTFFLFWAISVLHLLLKASSNLEGDALNALKSNLNDPNNVLQSWDATLVNPCTWFHVTCNGDNSVTRVDLGNAALSGTLVSNLGDLPNLQYLELYNNNITGKIPDELGNLANLESLDLYLNEMSGVIPNTLGKLQKLRFLRLNNNNLTGTIPVSLTKVNTLQVLDLSFNNLEGDIPVNGSFSLFTPVSYKNNPHLNNITITPVPVSPSPPPSSGGSNTGAIAGGVAAGAALLFAAPAIALSYWRKRKPHDNFFDVPAEEDPEVHLGQLKRFSLRELLVATDNFSNKNILGRGGFGKVYKGRLADGGLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLLGFCMTSTERLLVYPFMSNGSVASCLRERNDSDPPLEWQKRKNIALGSARGLAYLHDHCDPKIIHRDVKAANILLDGEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKDKKLETLVDAELTGNYDDGEVEQLIQVALLCTQGSPMERPKMSEVVRMLEGDGLAEKWEQWQKEETYRQDFNNNPMHHPNANWMVLDSASHIQADELSGPR 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08664 619 Gene3D Ribonuclease Inhibitor 30 211 IPR032675 -
Vivi1g08664 619 ProSiteProfiles Leucine-rich repeat profile. 98 120 IPR001611 GO:0005515
Vivi1g08664 619 FunFam Somatic embryogenesis receptor-like kinase 1 370 587 - -
Vivi1g08664 619 FunFam Somatic embryogenesis receptor kinase 1 29 219 - -
Vivi1g08664 619 ProSitePatterns Protein kinases ATP-binding region signature. 299 321 IPR017441 GO:0005524
Vivi1g08664 619 SUPERFAMILY L domain-like 33 197 - -
Vivi1g08664 619 ProSiteProfiles Protein kinase domain profile. 293 577 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g08664 619 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Vivi1g08664 619 SUPERFAMILY Protein kinase-like (PK-like) 272 568 IPR011009 -
Vivi1g08664 619 Gene3D Transferase(Phosphotransferase) domain 1 370 587 - -
Vivi1g08664 619 Pfam Protein kinase domain 294 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g08664 619 SMART serkin_6 293 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g08664 619 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 13 578 - -
Vivi1g08664 619 Pfam Leucine rich repeat 75 128 IPR001611 GO:0005515
Vivi1g08664 619 Gene3D Phosphorylase Kinase; domain 1 262 369 - -
Vivi1g08664 619 ProSitePatterns Serine/Threonine protein kinases active-site signature. 416 428 IPR008271 GO:0004672|GO:0006468
Vivi1g08664 619 FunFam Somatic embryogenesis receptor kinase 1 262 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08664 Vivi-Chr1 248592075 248596419 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08664 15 619 Receptor kinase-like Gene Family AT4G33430 74.924 0.0 926
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vivi1g08664 Pkinase 3.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08664 K13416 - gmx:100800522 1003.82