Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08663 ATGGAGGAAAGACTGATTTCATCATCATCTTCTAAATCTTTCTTTCTTTTTTGGGCAATTATGGTTCTTCATTTCCTGCTTAAAGCTTCTTCCAATCCAGAAGGTGATGCACTGATTACATTGAAGAGGAACTTGAAGGATCCTAATAATGTTCTTCAAGATTGGGATGCTACACTTCCAAATCCATGCACATGGTTTCATGTTACGTGCAATCAACATAACAGCGTGATCGCCGTTGATCTTGGAAATCAGGACCTTTCTGGTACACTGGTTTCACAACTTGGCGATCTCTCAAATTTGCAGTACTTGGAACTTTATAACAATAGTATAACTGGTAAAATCCCCGAAGAGCTAGGAAATTTGGCAAATTTGGTTAGCTTGGATCTTTACTTGAACAATATAAGTGGTACTATACCCAATACATTGGGCAAGCTTCAAAAACTACACTTCCTGCGTCTCAATAATAACACTTTGAGTGGCCGCATTCCCGTGTCTTTGTCAAATGTTTCTACGCTGCAAGTTCTTGATCTCTCAAACAACAATCTAGAAGGGGATGTTCCAGTGAATGGTTCATTTTCATCATTTACCTATGTCAATTATCAAAATAATCCTCACTTGCAACCGCCAAAAATAATTCCTCCACCGCCATCACCAGCTTCTTCAGGTAGTCAAAATACTGGAGTTATTGCAGGAGGAGTTGCTGCTGGTGCTGCTCTGTTGTTTGCTGCCCCTGCAATTGCACTTGCTTATTGGAGAAAAAGAAAGCCACTCGATCATTTCGATCACGTCTTTGATGTTCCTGGTGAGGAGCATCCTGAAATTCACCTTAGTCTGCCTAAAAGGTTTTCCTGGCGTGAGCTGCTAGTAGCGACAGATAAGTTCAGTAACAAAAACATAATAGGCAGAGGTGGATTCGGAAAAGTTTATAAAGGACGTTTAGCTGATGGCACCCTTGTAGCCGTAAAAAGACTTAGAGAGGAAAGGACACAAGGTGGGGAGCTACAATTTCAAATAGAAGTTGAAATGATCAGTATGGCTGTGCATCGCAATTTGCTCCGGCTTCGTGGTTTTTGCGTAACATATACTGAACGTTTGCTTGTGTATCCTTATATGGCCAATGGAAGTGTTGCATCATTTTTACGAGAACGTAGTGAATCCGATCCGCCACTTGAGTGGCCAATACGGAAGAATATTGCGCTGGGATCTGCCAGAGGGCTTGCTTACTTGCACGACCATTGTGACCCCAAGATTATTCATCGTGATGTGAAAGCTGCAAACATATTTCTGGATGAGGAATTTGAAGCAGTTGTTGGACATTTCGGTGTAGCAAAGCTTATGGATTACAAAGATACACATGCTACTACTGCTGTTCGTGGTACGGTTGGGCATATAGCACCTGAGTACCTGTCAAGAGGAAAGTGTTCAGAAAAGACGGATGTTTTTGGATACGGTGTGATGCTTCTCGAACTAATAAATGGTCATAATGCTATTGAGCTTGGATGTCTTGCCAATGATGATGATCTGATCTTGTATGATTGGGTTAAAGGACTTGTGAAAGACAAAAAGTTAGCTACACTTGTAGATGCAGAATTAACTGGAAAATATGATTTTGATGAGGTGGAGCAGTTAATCCAAGTGGCTTTACTATGCACACAATGGTCTCCAATGAAAAGACCAAAGATGTCAGAGGTTGTGAGAATGCTGGAAGGTGATGGTTTGGCAGAAAAGTGGGAGCAATGGAAGATGCATCACCTGAATGCAAAGTGGATAGAGTTAGATTCAACTGAACGTTTCGAGGGAGAGGAACTCCCAGGTCCTAGATGA 1824 0.4156 MEERLISSSSSKSFFLFWAIMVLHFLLKASSNPEGDALITLKRNLKDPNNVLQDWDATLPNPCTWFHVTCNQHNSVIAVDLGNQDLSGTLVSQLGDLSNLQYLELYNNSITGKIPEELGNLANLVSLDLYLNNISGTIPNTLGKLQKLHFLRLNNNTLSGRIPVSLSNVSTLQVLDLSNNNLEGDVPVNGSFSSFTYVNYQNNPHLQPPKIIPPPPSPASSGSQNTGVIAGGVAAGAALLFAAPAIALAYWRKRKPLDHFDHVFDVPGEEHPEIHLSLPKRFSWRELLVATDKFSNKNIIGRGGFGKVYKGRLADGTLVAVKRLREERTQGGELQFQIEVEMISMAVHRNLLRLRGFCVTYTERLLVYPYMANGSVASFLRERSESDPPLEWPIRKNIALGSARGLAYLHDHCDPKIIHRDVKAANIFLDEEFEAVVGHFGVAKLMDYKDTHATTAVRGTVGHIAPEYLSRGKCSEKTDVFGYGVMLLELINGHNAIELGCLANDDDLILYDWVKGLVKDKKLATLVDAELTGKYDFDEVEQLIQVALLCTQWSPMKRPKMSEVVRMLEGDGLAEKWEQWKMHHLNAKWIELDSTERFEGEELPGPR 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08663 607 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
Vivi1g08663 607 FunFam Somatic embryogenesis receptor-like kinase 1 371 588 - -
Vivi1g08663 607 ProSiteProfiles Protein kinase domain profile. 294 578 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g08663 607 ProSitePatterns Serine/Threonine protein kinases active-site signature. 417 429 IPR008271 GO:0004672|GO:0006468
Vivi1g08663 607 SMART serkin_6 294 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g08663 607 FunFam Somatic embryogenesis receptor kinase 1 263 370 - -
Vivi1g08663 607 ProSitePatterns Protein kinases ATP-binding region signature. 300 322 IPR017441 GO:0005524
Vivi1g08663 607 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 13 579 - -
Vivi1g08663 607 SUPERFAMILY L domain-like 32 207 - -
Vivi1g08663 607 Gene3D Transferase(Phosphotransferase) domain 1 371 588 - -
Vivi1g08663 607 Pfam Protein kinase domain 295 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g08663 607 Gene3D Phosphorylase Kinase; domain 1 263 370 - -
Vivi1g08663 607 Gene3D Ribonuclease Inhibitor 31 211 IPR032675 -
Vivi1g08663 607 SUPERFAMILY Protein kinase-like (PK-like) 271 569 IPR011009 -
Vivi1g08663 607 Pfam Leucine Rich Repeat 172 185 IPR001611 GO:0005515
Vivi1g08663 607 Pfam Leucine Rich Repeat 99 121 IPR001611 GO:0005515
Vivi1g08663 607 FunFam Somatic embryogenesis receptor kinase 1 30 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08663 Vivi-Chr1 248585860 248589821 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08663 1 607 Receptor kinase-like Gene Family AT4G33430 65.127 0.0 809
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vivi1g08663 Pkinase 2.2e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08663 K13416 - gmx:100800522 891.723