Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08654 ATGGATGTTTTGTTATCCTTAAACTCAAGTTCAGGCCTAATCAACATTTCAAAACTACACAAACATCATCATAACCTTCATCTCTCAAATAATCATCAAAGACAGAGACAACCTCGTAGGTTACAGTTTTCGGTTTCATGCAGAGCCACAAAAAGTGTTCCAATGAATCATAAGCTAAAAGATGAAGATGGAAACTTGTACAAGACACTATCTTTGAGTCCTAAAACTGCAACAACAGATGAGATCAAGAGAGCTTATAGAACAATGGCGCTTCGGTATCATCCTGATGTTTGTCGTGATGGTTTGAAGAAAGAGGAATCGACGAGGATGTTTGTAAAACTGAATGAAGCATATAAGATATTGTCGAATCCAAAGCTTAAAGAAGAGTATGATTCAAAGTTATTGGGTTTGGGTGACATGAGAAGTTCTGTGAATAGCTGTCAATTGTTCTTGTGGGATGATGAAATCAGAGACGATGTCAATATGCATCGGATGAAACTACCAGAATGTAAAAGCTGTGATATACTATCAGTGAAGTTAGAGACCGCAACAAACAAAATTGAGAAGTTGAAGAAGAAGAATGCAAGTCAGAACAGTGTTAATATGAGGCTGAAGAAGACTATTTTGATTCTCTGTTTATTGCTTATTGGCATTGTGTATTACTTAGATTAA 672 0.3601 MDVLLSLNSSSGLINISKLHKHHHNLHLSNNHQRQRQPRRLQFSVSCRATKSVPMNHKLKDEDGNLYKTLSLSPKTATTDEIKRAYRTMALRYHPDVCRDGLKKEESTRMFVKLNEAYKILSNPKLKEEYDSKLLGLGDMRSSVNSCQLFLWDDEIRDDVNMHRMKLPECKSCDILSVKLETATNKIEKLKKKNASQNSVNMRLKKTILILCLLLIGIVYYLD 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08654 223 CDD DnaJ 65 123 IPR001623 -
Vivi1g08654 223 PRINTS DnaJ domain signature 86 101 IPR001623 -
Vivi1g08654 223 PRINTS DnaJ domain signature 68 86 IPR001623 -
Vivi1g08654 223 PRINTS DnaJ domain signature 106 126 IPR001623 -
Vivi1g08654 223 SMART dnaj_3 64 126 IPR001623 -
Vivi1g08654 223 SUPERFAMILY Chaperone J-domain 62 134 IPR036869 -
Vivi1g08654 223 Coils Coil 173 207 - -
Vivi1g08654 223 Pfam DnaJ domain 65 131 IPR001623 -
Vivi1g08654 223 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 27 141 - -
Vivi1g08654 223 ProSiteProfiles dnaJ domain profile. 65 134 IPR001623 -
Vivi1g08654 223 Gene3D DnaJ domain 51 147 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08654 Vivi-Chr1 248301475 248307960 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08654 67 132 C2H2 Transcription Factor Family AT1G74250 42.647 1.31e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08654 - - vvo:131598714 405.216