Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08652 ATGGATGTTTTATTATCCTTAAACTCAAGCTCAAGCTTAATCAACATTTCAAAGCCATACAAACATCATCATAGCCTTCCACTTTCATATAATCATCAAAGACAATCTCGTACGGTTCACTTTTCTGTCTCATGCAAAGCCACAAAAAGTATTCCAATAAATCATAAGCTAGATGATGGAAACTTGTACAATATACTATCTCTAAGTCCTAAAAGTGCAACAACAGATGAGATAAAGAGAGCTTATAGAAGAATGGCACTTCAGTATCATCCTGATGTTTGTCATGATGGTTTGAAGAAAGAGGAATCAACTAGGATGTTTGTAAAACTGAATGAAGCTTATACGATATTGTCGAATCCAAAGCTTAAAGAAGAGTATGATTGTAAGTTATTGGGTTTGGATGATTTGAGAAGAAGTAGGTGGATGGAACAAGTTGTCGATTTGAGTATAAGATCTCATACAGGTAAGGGTGGTGCATCATCATGGGGTAGTAGAATGAGATCCAAGAACAATATGAATAAAGTTCATCAAAATTGCTAG 540 0.3481 MDVLLSLNSSSSLINISKPYKHHHSLPLSYNHQRQSRTVHFSVSCKATKSIPINHKLDDGNLYNILSLSPKSATTDEIKRAYRRMALQYHPDVCHDGLKKEESTRMFVKLNEAYTILSNPKLKEEYDCKLLGLDDLRRSRWMEQVVDLSIRSHTGKGGASSWGSRMRSKNNMNKVHQNC 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08652 179 CDD DnaJ 61 119 IPR001623 -
Vivi1g08652 179 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 21 173 - -
Vivi1g08652 179 MobiDBLite consensus disorder prediction 157 179 - -
Vivi1g08652 179 Pfam DnaJ domain 61 127 IPR001623 -
Vivi1g08652 179 PRINTS DnaJ domain signature 102 122 IPR001623 -
Vivi1g08652 179 PRINTS DnaJ domain signature 64 82 IPR001623 -
Vivi1g08652 179 PRINTS DnaJ domain signature 82 97 IPR001623 -
Vivi1g08652 179 SUPERFAMILY Chaperone J-domain 56 131 IPR036869 -
Vivi1g08652 179 ProSiteProfiles dnaJ domain profile. 61 130 IPR001623 -
Vivi1g08652 179 Gene3D DnaJ domain 49 147 IPR036869 -
Vivi1g08652 179 SMART dnaj_3 60 122 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08652 Vivi-Chr1 248280314 248281024 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08652 63 127 C2H2 Transcription Factor Family AT1G74250 44.776 5.11e-10 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08652 - - psat:127115916 257.299