Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08650 ATGGATGTTTTATTATCCTTAAACTCAAGCTCAAGCTTAATCAACATTTCAAAGCCATACAAACATCATCAAAGACAATCTCCTACGGTGAACTTTTCTGTTTCATGCCGAGCCACAAAAAATATTCCCATTAATCAAAAGCTACAAGATGATGAAGATGGAACTTTGTACAATATTCTATCTTTGTGCCCTAAAAGTGCAACAATGGATGACATAAAGAGAGCTTATAGAAGAATGGCACTTCAGTATCATCCTGATGTTTGTCATGATAGTTTGAAGAAAGAGGAATCAACTAGGATGTTTGTAAAACTAAATGAAGCTTATGAGATATTGTCGAATCCAAAGCTTAAAGAAGAGTATGATTGTAAGTTATTGGGTTTGGATGATATGAGAAGAAGTAAATGGATGGAACAAGTTGTTGAGTTGAAAAGAAGGTCTCATACACATAAAGGTGGTGCATCATCATGGGGTAGTAGAATGAGAGCCAAGAACAATATGAACAAAGTTCATCAGAATTGCTAG 522 0.3487 MDVLLSLNSSSSLINISKPYKHHQRQSPTVNFSVSCRATKNIPINQKLQDDEDGTLYNILSLCPKSATMDDIKRAYRRMALQYHPDVCHDSLKKEESTRMFVKLNEAYEILSNPKLKEEYDCKLLGLDDMRRSKWMEQVVELKRRSHTHKGGASSWGSRMRAKNNMNKVHQNC 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08650 173 CDD DnaJ 55 113 IPR001623 -
Vivi1g08650 173 Gene3D DnaJ domain 44 148 IPR036869 -
Vivi1g08650 173 SMART dnaj_3 54 116 IPR001623 -
Vivi1g08650 173 SUPERFAMILY Chaperone J-domain 53 125 IPR036869 -
Vivi1g08650 173 PRINTS DnaJ domain signature 58 76 IPR001623 -
Vivi1g08650 173 PRINTS DnaJ domain signature 76 91 IPR001623 -
Vivi1g08650 173 PRINTS DnaJ domain signature 96 116 IPR001623 -
Vivi1g08650 173 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 19 167 - -
Vivi1g08650 173 Pfam DnaJ domain 56 121 IPR001623 -
Vivi1g08650 173 ProSitePatterns Nt-dnaJ domain signature. 101 120 IPR018253 -
Vivi1g08650 173 ProSiteProfiles dnaJ domain profile. 55 124 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08650 Vivi-Chr1 248240842 248241685 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08650 57 122 C2H2 Transcription Factor Family AT1G74250 41.176 5.73e-09 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08650 - - psat:127115916 228.794