Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08648 ATGGATGTTTTATTATCCTTAAACTCAAGCTTAAGCCTTATCAACATTTCAAAACCATACAAACATCATCATAACCTTCAACATTCTAATAATCATCAAAGACAACCTCGTACAACACACTTTTCTGTTTCATGCCGAGCCACAAAAAATGTTCCCATTAATCAAAAGCTACAAGATGATGAAGATGGAAACTTGTACAAGATACTATCTTTGAGTCCTAAAAGTGCAACAATGGATGACATAAAGAGAGCATATAGAACAATGGCGCTTCGGTATCATCCCGATGTTTGTCACGATCGAATGAAGAAAGAGGAATCGACGAGGATGTTTGTAAAATTGAATGAAGCTTATAAGATATTGTCGAATCCAAAGCTTAAAGAAGAGTATGATTGTAAGTTATTTGGTTTGGATGATTTGAGAAGAAGTAGGTGGATGGAACAAGTTGTTGAATTGAATAGAAGGTCTCATACACATAGAGGTGGTGCATCATGGGGTAGTAGAATGAGAGCCAAGAACAATATCAATATAGATGATCATAATAACTAA 546 0.3498 MDVLLSLNSSLSLINISKPYKHHHNLQHSNNHQRQPRTTHFSVSCRATKNVPINQKLQDDEDGNLYKILSLSPKSATMDDIKRAYRTMALRYHPDVCHDRMKKEESTRMFVKLNEAYKILSNPKLKEEYDCKLFGLDDLRRSRWMEQVVELNRRSHTHRGGASWGSRMRAKNNINIDDHNN 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08648 181 ProSiteProfiles dnaJ domain profile. 64 133 IPR001623 -
Vivi1g08648 181 SUPERFAMILY Chaperone J-domain 61 134 IPR036869 -
Vivi1g08648 181 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 21 173 - -
Vivi1g08648 181 Pfam DnaJ domain 64 130 IPR001623 -
Vivi1g08648 181 CDD DnaJ 64 122 IPR001623 -
Vivi1g08648 181 Gene3D DnaJ domain 50 154 IPR036869 -
Vivi1g08648 181 MobiDBLite consensus disorder prediction 155 181 - -
Vivi1g08648 181 SMART dnaj_3 63 125 IPR001623 -
Vivi1g08648 181 PRINTS DnaJ domain signature 85 100 IPR001623 -
Vivi1g08648 181 PRINTS DnaJ domain signature 105 125 IPR001623 -
Vivi1g08648 181 PRINTS DnaJ domain signature 67 85 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08648 Vivi-Chr1 248224139 248224718 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08648 66 130 C2H2 Transcription Factor Family AT1G74250 37.313 9.33e-07 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08648 - - psat:127115916 265.003