Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08645 ATGGCAGCTGCAACATCTGGTGCTGTGTTGAATGGTTTGGGATCTTCCTTCTTATCTGGTGGAAAGAGGAGCCAAACCCTGCTAGCTACTTCCATTGGAAGCAAAGTTGGTGTTGCAGCTGTTAGTCCTAGAAGACTTATTGTTGCTGCTGCTGCTTCTGCACCAAAGAAATCATGGATCTCTGGTGTTACATTCGGCGGAAACTTCGTCGACCCCGAATGGCTCGACGGATCGCTACCAGGTGACTTTGGTTTCGACCCACTAGGCCTTGGCAAGGACCCGGCATTTCTGAAATGGTACAGAGAAGCCGAGCTCATTCACGGTCGATGGGCAATGGCTGCAGTTCTAGGTATTTTTGTTGGCCAGGCATGGAGTGGAGTTCCATGGTTCGAGGCAGGAGCCGATCCCAACGCGATTGCTCCATTCTCGTTCGGTACTCTTCTAGGCACACAGTTGATTCTCATGGGATGGGTGGAGAGCAAGAGATGGGTTGATTTCTTCAACCCGGACTCACAGTCGGTCGAATGGGCCACTCCATGGTCTAAAACAGCGGAGAATTTTGTTAACTCAACCGGAGAACAAGGCTACCCTGGTGGAAAATTCTTCGATCCATTGTCGCTCGCTGGTACTATCCAAAACGGAGTTTACATTCCGGATACAGACAAGTTAGAGAGATTGAAACTGGCTGAGATTAAGCATGCTAGGCTTGCTATGTTAGCTATGCTGATTTTCTACTTTGAAGCTGGACAAGGGAAGACACCGCTCGGCGCTCTTGGCTTGTAA 783 0.4955 MAAATSGAVLNGLGSSFLSGGKRSQTLLATSIGSKVGVAAVSPRRLIVAAAASAPKKSWISGVTFGGNFVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGVPWFEAGADPNAIAPFSFGTLLGTQLILMGWVESKRWVDFFNPDSQSVEWATPWSKTAENFVNSTGEQGYPGGKFFDPLSLAGTIQNGVYIPDTDKLERLKLAEIKHARLAMLAMLIFYFEAGQGKTPLGALGL 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08645 260 Pfam Chlorophyll A-B binding protein 72 248 IPR022796 -
Vivi1g08645 260 FunFam Chlorophyll a-b binding protein, chloroplastic 72 259 - -
Vivi1g08645 260 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 56 258 IPR001344 GO:0009765|GO:0016020
Vivi1g08645 260 SUPERFAMILY Chlorophyll a-b binding protein 70 260 - -
Vivi1g08645 260 Gene3D Chlorophyll a/b binding protein domain 72 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08645 Vivi-Chr1 248133723 248134947 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08645 1 260 Chloroplast and Mitochondria Gene Families AT1G15820 82.308 5.00e-154 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08645 K08917 - gmx:100500118 480.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g08645 1 248133723 248134947 Vivi1g08645 1 248133723 248134947 ECH