Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08642 ATGGGGTTACCCCTTTTTGTTCTTCAACTCATCACTTTTTCAGTTCTTGCTATAGCACAAGAAGAACCTAAAGGGACCCCCAAAGATAATAGTGAAGTCCAAAATAAACACTCAAATTCCAATCTTTTATTATTGATTCTCAACGTGGTTCTTCTTTTCGCGATTATATTGCTATTGATTCTTTACTACAACACTTCGAAGAAACTCAATAGAATAATGAAAGGACACATTAGCAACATGTCTTATGAACAAGAGAAAGATGTTGAGACAAGTATTGAGAAGAGGGTTGAGATAGGAGAAGGAACAACAATGATGACAGTGGAAGAGAGAAAGGAGTTGATGTTTTTTAGTGATGAGACAAAGTTTCAAATGGGGGAACTTCTTAGAGCTTCTGCTGAGGCATTAGGACATGGGATTATGGGGAATAGTTATAAGGCTATGTTGAGTAATGGACCTAACATTGTTGTTAAGAGGTTAAGGGACTTGAAACCTTTCACTAAGGAGGAGTTTGCTAAGATGGTGAAAATGATTTCTGATCTTAGGCATCCTAATTTGTTGCCTTTGCTTGCTTACTACCATTCAAGAGATGAGAAGCTTATGCTCTATAGATATGCACAGAATGGAAATCTTTTCTCCAAACTTCATGATGGAAGAGACGGAAACAGGGTTCCTTTCAATTGGAACTCAAGATTATCAGTGGCAAGAGAAGTGGCTAGAGCACTAGAGTACCTTCACCTCAACAACAAGATCCATAACATAGTCCCTCATGGAAATTTGAAGTCATCAAATGTACTATTTGATGAAAACAATTCAATTCTTGTATCTGACTTTAGCCTTTCCTCCTTGATAGCACAACCAATTGCAGCTCAACATATGGTTGTTTACAAATCACCTGAATATGGTTATGCAAGAAAAGTTACAATACAATCAGATGTTTGGAGCTATGGATCACTCTTAATAGAAATCCTAACTGGGAAAGTTTCTCTCTGCTCAGCTCCACAAGGGACTAATGGTGTGGATCTTTGTAGTTGGGTTCATAGAGCTGTGAGAGAAGAATGGACTGCTGAGATATTCGACAAGGAAATATCTTGTCAAAAGAGTGCTCTTCCTGGGATGTTAAGGTTGTTGCAGATAGCAATGAGATGCATCGAGAGGTTTCCAGAGAAACGGCCTGAGATGAATGAGGTGGTTAGAGAAGTGGAGAAAATACAACAGATACACTTGATGTCTGAAGACGACGATGATGTTTCTTGTGATAGGTCTCTAACCGATGATTCCTTTTCAACTAGTAACTCGGGGTTTTTTATCGGAGATGAAAGATAG 1323 0.3847 MGLPLFVLQLITFSVLAIAQEEPKGTPKDNSEVQNKHSNSNLLLLILNVVLLFAIILLLILYYNTSKKLNRIMKGHISNMSYEQEKDVETSIEKRVEIGEGTTMMTVEERKELMFFSDETKFQMGELLRASAEALGHGIMGNSYKAMLSNGPNIVVKRLRDLKPFTKEEFAKMVKMISDLRHPNLLPLLAYYHSRDEKLMLYRYAQNGNLFSKLHDGRDGNRVPFNWNSRLSVAREVARALEYLHLNNKIHNIVPHGNLKSSNVLFDENNSILVSDFSLSSLIAQPIAAQHMVVYKSPEYGYARKVTIQSDVWSYGSLLIEILTGKVSLCSAPQGTNGVDLCSWVHRAVREEWTAEIFDKEISCQKSALPGMLRLLQIAMRCIERFPEKRPEMNEVVREVEKIQQIHLMSEDDDDVSCDRSLTDDSFSTSNSGFFIGDER 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08642 440 Gene3D Phosphorylase Kinase; domain 1 96 204 - -
Vivi1g08642 440 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 36 404 IPR046959 -
Vivi1g08642 440 SUPERFAMILY Protein kinase-like (PK-like) 133 407 IPR011009 -
Vivi1g08642 440 Gene3D Transferase(Phosphotransferase) domain 1 205 425 - -
Vivi1g08642 440 Pfam Protein tyrosine and serine/threonine kinase 133 399 IPR001245 GO:0004672|GO:0006468
Vivi1g08642 440 ProSiteProfiles Protein kinase domain profile. 129 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08642 Vivi-Chr1 248090888 248092619 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08642 18 404 Receptor kinase-like Gene Family AT2G36570 34.951 2.13e-73 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vivi1g08642 PK_Tyr_Ser-Thr 9.3e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08642 - - mtr:11421603 744.191