Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08634 ATGTCATCTTCTTCTTCTTCGATTCTTGTAATCCAAATTCCTACAGCAACAACGGTTTCTGCTGTGAAGCAGATATCACTTTTCAAACCTCTTAATCTGAATTTTCAAAAAGGCAGAAGCATCCAACGGCAGCTGAATCACCATGCTCCCTGCCACAACTCAGTTAAGCCATTGCGGTTACGGTGCTCAGCTTCTTCCAGTGGTGGGGACCACCTCCATGAAGATGATGCTATTGTTCTCCATGTTCGGGGAATGATGTGTGAGGGATGTGCATCTAGCGTCAAAAAAATTCTCGAAACTCAACCACAAGTGTTATCTGCAACTGTGAATCTAGCATCAGAGACAGCACTAGTTTCACCTTTATTATCTGAAGATAAAACTCCACCAAATTGGCAAAAGCAGTTAGGAGAAACACTTGCAAACCATTTAACTACATGTGGTTTTGCAACTACCCTTAGAGGTCAGGAAGATAGTCGCTAA 480 0.425 MSSSSSSILVIQIPTATTVSAVKQISLFKPLNLNFQKGRSIQRQLNHHAPCHNSVKPLRLRCSASSSGGDHLHEDDAIVLHVRGMMCEGCASSVKKILETQPQVLSATVNLASETALVSPLLSEDKTPPNWQKQLGETLANHLTTCGFATTLRGQEDSR 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08634 159 ProSiteProfiles Heavy-metal-associated domain profile. 76 144 IPR006121 GO:0046872
Vivi1g08634 159 FunFam Copper-transporting ATPase PAA1, chloroplastic 76 152 - -
Vivi1g08634 159 CDD HMA 79 118 IPR006121 GO:0046872
Vivi1g08634 159 Pfam Heavy-metal-associated domain 80 126 IPR006121 GO:0046872
Vivi1g08634 159 Gene3D - 76 155 - -
Vivi1g08634 159 SUPERFAMILY HMA, heavy metal-associated domain 78 121 IPR036163 GO:0046872
Vivi1g08634 159 ProSitePatterns Heavy-metal-associated domain. 82 111 IPR017969 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08634 Vivi-Chr1 248017764 248020565 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08634 61 153 Primary Pumps ATPases AT4G33520 58.065 2.45e-30 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08634 - - mtr:11435142 188.734