Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08632 ATGGCGGAGCGTTCTTCTTACGAATTGGGTCCTCGATTAGATATCCAGCAATTACAATTTGAAGCCCAGCATCGGTGGTTACGACCTGCAGAAATTTGTGAAATTCTTCGTAATTATCGGATGTTTCATATCACATCAGAACCTCATATAAGGCCACCGAGCGGTTCACTTTTTCTTTTTGACCGGAAGGTTTTGAGATACTTTAGAAAGGATGGGCATAATTGGAGAAAGAAAAAAGATGGAAAAACTGTAAAAGAAGCTCATGAAAAATTAAAGGTGGGAAGTGTTGATGTGTTACATTGTTACTACGCACATGGAGAAGAAAACGAAAATTTTCAAAGGCGAAGCTATTGGATGCTTGAACAGGATACACACATAGTATTTGTCCACTACTTGGAAGTTAAGGGTAACAAGTCAAATACGGGAGGAAACGCTGATAGCGATGGGGTCATATCAGATTCTCAAAAGGTCAATTCTCCGTCGTCTGGATTTCCTACAAGTTATAGTAGTGTGCCTTCACTGAGTACAGATTCCATGAGCCCAACTAGCAGCATGACATCTTTACGTGAAGATGCCGATTCAGGTGATTATGGACAGTCATCAGTTTCTGGGACGGAATATATCCCACATTTTGATAGGGATAAATTTCGGGGAAATGATGCTACTGGTATTGATGGCCTGAAAGCACATGGCCTGGCTTCATGGGACACAGTCTTGCATGCTGATCCTTCTCTTGTATCATTTCCTTCCATTCCATCTAGTTCACTGGCAAACATCCTTGACCCAGAACATAACATCTTGGGTGACTTTTCAATGAACAGAAGTGGTCTCACTATTGGAGCAGGGAGCTCTCAGCCTCTCCAATCTAATTGGCAGATTCCTTTTGAAGACAACACAGGACACATGCCAACCTTTACCCAGTCATTGAGTTTGGAATTTGAATCTGATTATGGAACTGGTTTACTAGGGAATGAAGATCGTAATGAAAGTTCTGAAATTGATCCTGTCATGTTCAGTTTTCACGGTGAGCCAAAAGAGAAGCTTGCACAGCAAAACTATCTGGAAGAAAAGGTAGACGAACAACAGCAAGATGACCTCAAGTCCAATTCTACAAGTGAAGTTCTTAGTGAAGAAACTATTAGCTATCCCTTATCTGCGAGGCGCACATTATTGGATAGGGATGAGAGCTTGAGGAAGGTTGATAGCTTCAATCGATGGATTACTAAAGCACTTGGTGAGGTGGATAATTTGAATATGCAGTCCTCAAGTGGTATTTCATGGAGTACAGATGAATGTGGGCATGTCATAGATGATACCTCACTGAGCCCATCATTGTCTCAGGACCAACTATATAGCATAAATGATTTTTCACCTAAATGGGCTTGTGCTGAGTCGGACATTGAGGTGTTGATTATTGGATCGTTTTTGAAAAGTCAATCAGACGTGACAACCTGTAACTGGTCCTGTATGTTTGGGGAGGTTGAGGTTCCTGCTGAGGTTGTAGCTAATGGAATTCTGTGCTGTCAAGCTCCTCCTCATAAGGTTGGCCGGGTCCCTTTCTATGTAACATGTTCCAATAGGTTAGCTTGCAGCGAAGTGCGTGAATTTGATTTCAGAGAGGGCTATTCTAGAAATGTAGATTATACCGATTTTTTCAACAGTTCGGCTGGCATGATACTTCATTTGCGACTGGAGGAGTTTCTTTCTTTAAAACCAGCGCACCCTTCAAATCAAACCTTTGAGGGCAGTGTGGAGAAAATGAACTTAATTTCTAAACTTATTTCACTAAGAGAGGAAGAAGAATATTCAAGTAAGGAAGAGCAGTCTCTGTTTCACAAGCAGGTTAAAGAGAAACTGTACTCGTGGCTACTTCATAAGTTAACCGAGAGTGGTAAAGGGCCAAATGTGTTAGATACGGATGGGCAGGGCGTGCTACATTTAGCAGCTGTTCTTGGTTATGACTGGGCAATAACCCCAATTTTAACTGCTGGAGTTAGTATCAACTTCCGTGATGTGAATGGATGGACAGCTTTGCATTGGGCGGCATCTTGTGGCAGAGAGCAGACAGTTGGTGTCCTTGTATCCATGGGTGCAGATTGTGGAGCATTGACGGATCCATCTCCAGAATTTCCTTCAGGTAGAACAGCCGCAGATCTCGCCTCTAGCAATGGGCATAAAGGACTCTCTGGTTTTCTAGCGGAGTCTTCATTAACAAGCCACCTTGAAACCCTCACAGTGGATGATCAACAAAAAGGTAAGCAAGAAGTTCCAGGAATGAAAACAGTACAGACAGTCTTGGAGCGAACTGCAACACCTGTGGTCTATAATGATATGCCTGATGCCCTCTGTCTGAAGGATTCTCTAACCGCTGTCCGCAATGCTACACAAGCTGCCGATCGCATACATCAAGTATTCAGAATGCAGTCCTTTCAGAGGAAACAGTTAACTCAGAATGAGGATGATGAGTTTGGTTTGTTAGATCAGCGGGCTCTCTCCCTACTAAATTCTAAGTCGTCCAAATCAGGACAAGGAGATGGTTTCTTCAATACCGCTGCAACTCAAATACAGAAGAAGTTTCGTGGTTGGAAGAAGAGGAAAGAGTTCTTGATCATTCGTCAAAGAATTGTTAAAATCCAGGCCCATGTAAGAGGTCACCAGGTAAGGAAGCAGTATAAAACTGTCATCTGGTCTGTGGGAATCCTGGAGAAGGTTATATTACGCTGGAGACGCAAGGGTAGTGGTCTACGTGGGTTTCGACCAGAAACCCTTAATAAAGCCCCCAGTCAACAAAATGATTCTCCGAAAGAAGATGATTATGATTATCTAAAGGAAGGACGGAAACAAAAAGAGGAAAAGATCCAAAAGGCCCTTTCTAGAGTGAAGTCCATGGTTCAGTATCCAGAGGCACGGGCTCAATACCGGCGCGTGCTAAATGTTGTCGAAGACTTCCGTCAAAAGAAGGATTCTAATATGGGTTTGATCAGTTCTGAAGAGACAGTTGATGGTGTAGAGGATTTGATCGATATTGATATGCTTTTAGATGACGATAATTTCATTCCCATAGCATTTGATTGA 3075 0.426 MAERSSYELGPRLDIQQLQFEAQHRWLRPAEICEILRNYRMFHITSEPHIRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEENENFQRRSYWMLEQDTHIVFVHYLEVKGNKSNTGGNADSDGVISDSQKVNSPSSGFPTSYSSVPSLSTDSMSPTSSMTSLREDADSGDYGQSSVSGTEYIPHFDRDKFRGNDATGIDGLKAHGLASWDTVLHADPSLVSFPSIPSSSLANILDPEHNILGDFSMNRSGLTIGAGSSQPLQSNWQIPFEDNTGHMPTFTQSLSLEFESDYGTGLLGNEDRNESSEIDPVMFSFHGEPKEKLAQQNYLEEKVDEQQQDDLKSNSTSEVLSEETISYPLSARRTLLDRDESLRKVDSFNRWITKALGEVDNLNMQSSSGISWSTDECGHVIDDTSLSPSLSQDQLYSINDFSPKWACAESDIEVLIIGSFLKSQSDVTTCNWSCMFGEVEVPAEVVANGILCCQAPPHKVGRVPFYVTCSNRLACSEVREFDFREGYSRNVDYTDFFNSSAGMILHLRLEEFLSLKPAHPSNQTFEGSVEKMNLISKLISLREEEEYSSKEEQSLFHKQVKEKLYSWLLHKLTESGKGPNVLDTDGQGVLHLAAVLGYDWAITPILTAGVSINFRDVNGWTALHWAASCGREQTVGVLVSMGADCGALTDPSPEFPSGRTAADLASSNGHKGLSGFLAESSLTSHLETLTVDDQQKGKQEVPGMKTVQTVLERTATPVVYNDMPDALCLKDSLTAVRNATQAADRIHQVFRMQSFQRKQLTQNEDDEFGLLDQRALSLLNSKSSKSGQGDGFFNTAATQIQKKFRGWKKRKEFLIIRQRIVKIQAHVRGHQVRKQYKTVIWSVGILEKVILRWRRKGSGLRGFRPETLNKAPSQQNDSPKEDDYDYLKEGRKQKEEKIQKALSRVKSMVQYPEARAQYRRVLNVVEDFRQKKDSNMGLISSEETVDGVEDLIDIDMLLDDDNFIPIAFD 1024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08632 1024 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 14 986 - -
Vivi1g08632 1024 SMART ANK_2a 673 702 IPR002110 GO:0005515
Vivi1g08632 1024 SMART ANK_2a 640 669 IPR002110 GO:0005515
Vivi1g08632 1024 SMART ANK_2a 712 741 IPR002110 GO:0005515
Vivi1g08632 1024 ProSiteProfiles Ankyrin repeat region circular profile. 673 699 - -
Vivi1g08632 1024 SUPERFAMILY Ankyrin repeat 611 734 IPR036770 -
Vivi1g08632 1024 MobiDBLite consensus disorder prediction 143 204 - -
Vivi1g08632 1024 Gene3D - 848 894 - -
Vivi1g08632 1024 ProSiteProfiles CG-1 DNA-binding domain profile. 15 140 IPR005559 GO:0003677
Vivi1g08632 1024 ProSiteProfiles Ankyrin repeat profile. 673 705 IPR002110 GO:0005515
Vivi1g08632 1024 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 849 898 IPR027417 -
Vivi1g08632 1024 MobiDBLite consensus disorder prediction 917 938 - -
Vivi1g08632 1024 ProSiteProfiles IQ motif profile. 849 877 IPR000048 GO:0005515
Vivi1g08632 1024 Pfam IPT/TIG domain 453 527 IPR002909 -
Vivi1g08632 1024 ProSiteProfiles IQ motif profile. 871 895 IPR000048 GO:0005515
Vivi1g08632 1024 Pfam Ankyrin repeats (3 copies) 622 701 IPR002110 GO:0005515
Vivi1g08632 1024 SUPERFAMILY E set domains 453 538 IPR014756 -
Vivi1g08632 1024 FunFam Calmodulin-binding transcription activator 2 446 542 - -
Vivi1g08632 1024 SMART CG_1_2 18 135 IPR005559 GO:0003677
Vivi1g08632 1024 Pfam IQ calmodulin-binding motif 873 892 IPR000048 GO:0005515
Vivi1g08632 1024 Pfam IQ calmodulin-binding motif 851 868 IPR000048 GO:0005515
Vivi1g08632 1024 ProSiteProfiles Ankyrin repeat profile. 640 672 IPR002110 GO:0005515
Vivi1g08632 1024 SMART iq_5 870 892 IPR000048 GO:0005515
Vivi1g08632 1024 SMART iq_5 847 869 IPR000048 GO:0005515
Vivi1g08632 1024 FunFam Calmodulin-binding transcription activator 2 848 895 - -
Vivi1g08632 1024 Pfam CG-1 domain 21 133 IPR005559 GO:0003677
Vivi1g08632 1024 Gene3D - 597 744 IPR036770 -
Vivi1g08632 1024 Gene3D Immunoglobulins 446 542 IPR013783 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08632 Vivi-Chr1 248004295 248014202 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08632 1 990 CAMTA Transcription Factor Family AT5G64220 52.277 0.0 1040
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Vivi1g08632 CG-1 1.2e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08632 K21596 - gmx:100818124 1563.51