Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08614 ATGAAGGAAGAAGAATCAACGGTGAAGATGGAGTGGTTATCTTCCATTGATTCAACCACTCTCTCACATTCTGAACTCCACGCGCTTTCTCTCTCTTCACTCTCTTCCTTCGACCTAAAATCCACGCGCGAAGTCATCACTCCCAAAATCGATCCCTCCACCTTCAACCACAGTGCCGGTTCCCACCGTCAAACCTACTCCCGACCTCGCCGTCTATGTCGCGTCGCGCCGCCGCTTGTTCCTACTCCCGCTCTCCCCGCCGACCACCGCATCATCGTCGATTACCTCAAGCAGTTTATCAGAGACGATCCGAAGTTCGACACGGTGGAGCTTCTTCCGCCGACAATTCCTTCGCCGCCGGTTTTGTTTGGCGGTGAAGTGTTTAATGGTGAAGTGAGGAAGAGGAAGAGAGGGAGGAAACCGAAAGTGAAGATGCATTTGAATGAGAGAGGGATGGGGATTGTGAATAAGAATGGCGTTGCGATTGATCTTGCTGCGTTGTTTAATGTGGAGCATCCGTTTGCGGCGGAGCTGGCGAGACGGACGGAGGGGATGAATAGTGAGGAAGAGCTGTTAGGGTTTTTGAGTGATTTGGTTGGGCAATGGGGGAGCAGGAGGAGGAAGAGGAGGATCGTTGATGCTGCCGATTTCGGAGACGTGTTGCCTCTTGATTGGAAGCTTCTTCTTAGTTTGAAGAGAAAAGATGGTCGTGCTTGGATCTATTGCCGCAGATATATAAGCCCTAGTGGACAGCAGTTTGTGTCTTGCAAAGAAGTTTCTTCCTATTTGCAGTCTCGCTTTGGCCCCTCTGATTTACAGTTACAAATCAGTAACAAGAGTGAAAACATACTTCAGGAACAGAGAGTTACTACTGATAATTCTGCAGGTGTTCCTCGCGAAGAGCAGGATCAACGGCAGATTGTTGCCACTAACTCTGATGTGTCTGGTATGTCAGTCTCTAATGAACGATTGAAAGAAGTGTCCTTGTTGGAGACAGAGAACCTTGCAGATGTGCAAATACATGATCTGTTTGAATGTCACAAGTGCAGCATGACCTTTGATGAGAAGGATGCGTATTTGCAGCACCTGTTGTCTATTCATCAAAGGACAACGAAACGGTATCGAGTTGGTGCATCTGTTTCAGATGGAGTTATAATTAAAGATGGGAAATTTGAGTGCCAGTTCTGTCATAAAGTGTTTTTGGAAAAGCGTCGCTACAATAGTCATGTTGGGATACATGTTAGGAATTATGTGAGGAGAGCTGAAAATTTACCAAGTCAGCCCAATGTCATGAGCACAGACAAGTCTCCAGTCACGGATGAGATGCCCTCTAGAATCTCTAAGATGGATGCCCTCGTCGAGATTGCTCAAAACTCTATTATGGAGGATTCTGTCATTGAACCAGATTGTTCTTCTAAACTAAATACAGTCCCTGTTTCAGAAATTGTGGTTGGTGACTTAGATGGAAACATAAAAGTCGAGTCTCCGATCAATGAACAACAAATGGATGAGAGCTTGATTGGTACAAATGTAGTTCACTGTTCAAATCAGCAAGGTAGTCCTCGTTTACCCATGGATGGAATAGTAGAGAAAACTGACTACAATAACCAAGTTGTTGATGCAAAGATGTATAGTTTTCAAGATAACATGGGCTTGTTATCTGTAAATAAGAATAATGTTGATGCACCTGATACTTCTAAAGGAAAAGGTGATGTTCCGCTGACTGTTGAGGGGTTTGATCATTCTGGGATTAATCTGCAAGGAGTTTCTCAAAGCCTGCTGTTTCCTTCATCTGGCAATCACATGAAACCCGAGAAGAGTGAAAATTCTGGTTGCACCAATACCCAAGGGGATCTTAAACTTGATGAAGACAATACTACTAAGAGTGACTTGAAAATTGGTTTAGATAGCTGCAAGGATGCACCTGGTGTTGCTAATGTTCAAGTGACAGCAATTCCAACTTCTAAAGAAAATGTGGTCCAATCTAGGGTTTCTAACACCTCTATATCCCCAGAACAATCTTTGTATTCTTTTTCTGCTTTCAGCTCAGACAAGGGGTTCCAGGAATTGAGGTTAGAAGATATAGGTTCTCTCGAGTATGATTTTGCAAGTGTTCAAGGCTCTCTTGACGTGTCAGCTGAATTAGCAAATCACCTAGTGGTGCAAGGGACATGTGCATCCTCAGCTCAGTCTGCGTCACAAGAAGTTATGTTAAATGTGGATGACAATAATCTACTCACAACCGCATGTGTATGGTGCGGAATAGAGTTTAACCATGACGCTGTTAATTCTGAAATACAATCGGATTCTGTTGGATTCATGTGTCCAGTTTGCAAGGCAAAAATATCTGGTCAAATCAATATGTTGGATAGCGGTTCACCAAATGCTGGCCATCTTTAG 2400 0.4408 MKEEESTVKMEWLSSIDSTTLSHSELHALSLSSLSSFDLKSTREVITPKIDPSTFNHSAGSHRQTYSRPRRLCRVAPPLVPTPALPADHRIIVDYLKQFIRDDPKFDTVELLPPTIPSPPVLFGGEVFNGEVRKRKRGRKPKVKMHLNERGMGIVNKNGVAIDLAALFNVEHPFAAELARRTEGMNSEEELLGFLSDLVGQWGSRRRKRRIVDAADFGDVLPLDWKLLLSLKRKDGRAWIYCRRYISPSGQQFVSCKEVSSYLQSRFGPSDLQLQISNKSENILQEQRVTTDNSAGVPREEQDQRQIVATNSDVSGMSVSNERLKEVSLLETENLADVQIHDLFECHKCSMTFDEKDAYLQHLLSIHQRTTKRYRVGASVSDGVIIKDGKFECQFCHKVFLEKRRYNSHVGIHVRNYVRRAENLPSQPNVMSTDKSPVTDEMPSRISKMDALVEIAQNSIMEDSVIEPDCSSKLNTVPVSEIVVGDLDGNIKVESPINEQQMDESLIGTNVVHCSNQQGSPRLPMDGIVEKTDYNNQVVDAKMYSFQDNMGLLSVNKNNVDAPDTSKGKGDVPLTVEGFDHSGINLQGVSQSLLFPSSGNHMKPEKSENSGCTNTQGDLKLDEDNTTKSDLKIGLDSCKDAPGVANVQVTAIPTSKENVVQSRVSNTSISPEQSLYSFSAFSSDKGFQELRLEDIGSLEYDFASVQGSLDVSAELANHLVVQGTCASSAQSASQEVMLNVDDNNLLTTACVWCGIEFNHDAVNSEIQSDSVGFMCPVCKAKISGQINMLDSGSPNAGHL 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08614 799 ProSitePatterns Zinc finger C2H2 type domain signature. 393 413 IPR013087 -
Vivi1g08614 799 Gene3D Classic Zinc Finger 315 418 - -
Vivi1g08614 799 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 211 283 IPR001739 GO:0003677
Vivi1g08614 799 ProSitePatterns Zinc finger C2H2 type domain signature. 346 367 IPR013087 -
Vivi1g08614 799 Gene3D - 202 311 - -
Vivi1g08614 799 SUPERFAMILY DNA-binding domain 217 268 IPR016177 GO:0003677
Vivi1g08614 799 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8 2 609 IPR037472 -
Vivi1g08614 799 ProSiteProfiles Zinc finger C2H2 type domain profile. 344 372 IPR013087 -
Vivi1g08614 799 ProSiteProfiles Zinc finger C2H2 type domain profile. 391 418 IPR013087 -
Vivi1g08614 799 SMART c2h2final6 344 367 IPR013087 -
Vivi1g08614 799 SMART c2h2final6 391 413 IPR013087 -
Vivi1g08614 799 MobiDBLite consensus disorder prediction 599 619 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08614 Vivi-Chr1 246637371 246641714 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi1g08614 MBD 0.00025 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08614 - - gmx:100526917 891.338