Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08600 ATGGACGGAACCAACAGAGGCGAAGCAGAACGATGGCTCTACACAGCCAACAAGCTCCTCAGCGCGCGTGACCTACACGGCGCACGCTCATTCGCCATCCGCGCACGTGAATCCGACCCGCGATTCGAAGCCACCGAGCTTCTCTTAGCGGTTATCGACACTCTTCTAGCCGGCGAAGTTCAGATCAAAGAACATCTCGATTACTACGCCATTCTTCAAACTCTTCGTTACACTCAGAACATTGAGTACATCGCCGTTCAGTTCCGCCGTCTCGCCGTTCTCCTCGACCCTCACCGGAATCCGTTCGCTTTCGCTGCTCACGCTTTTTCTCTCGTTCATGATGCTTGGTCCATTTTCTCAAATCCGCATAAAAAGGCTTTGTATGATGAACAGCTTCATTTTCTTACTCAACCACCGCCACCACAACCTATTCAACCGCCACAGCCTCCACCGCCACCACAACCTATTCAACCACCGCCGTTACCACAACAACATATTCAACCTCCTCCTCCTTCAGTTCAGGTCAATCAGAATCATGACTTCCAACAAAGGAACAACCCTAACCCTGGGTCTTTCAACAAAGCTAACTTAGTTGCCGAGGAGCGAAACAGCGGGCCGAGGCCGAGTCGGAGCAATGTCGACGAGCCGACTAGGCCTAAGCCTGCTGAGACAGCTGAGACAGAAGTTGGAAGCTTCTGGACGGCGTGTCCTTACTGTTATGCGATGTTTGAGTATCCTAATGTTTATCAGGAGTGTACACTTCGGTGTCAGAATTGTAGGAAGGGGTTTCATGCGGTGGTGGTTAGGTCGCCACCGGAGTTGGGTGAAGATGGTAGTAAGTTTTGTAGCTTTGGGTATATTCCGTTAGGGTTTAGTGGGGATTTTAAGGATATTAGTGGGTCATCTTCGGAGTGGAACCCTGTTTCGACTTTGTTTCCTTGTAGTATGAAAGGTGGTTCTTCTAAGAGGGGGGTTTATCAAAGAGAGCCTGTTGTTTATCATGATCATGATACGTGTGCGGCTTTCGCGGAGCTTTCTGATGAAACTGAGGATGATACTGATGATGATGATTGGTGGAGAGGGGATGATAGTAAAGGGAGGAAGAAGGTGAGGAGGAGGAGGAAAAGAAGAAGGACTGTTGGAGGTAGTGGTGGTGAAAGGGGGCCTGTTGATACTGGGAGGCCCAAGAGAGGCGTTCAGAAAGGTAATGCTAGCGATGGTGGTGGTGGCGAGAACGTGGATGATGGTGAGGCTGTTGATCCTGCTTCTGTGCCTACGAAGCTGATCAACGTTGAAGCTTGTAAGAAAGCTGTGTTGGGTGGTTCGAGGAGGAGGGGTGCTGCCAATTTGGGTAAATTGGACCTGAATGTGGAGTTTAGCAATGAGGTGGAAGAAGCTGCTGCTGCCGCCGGAGTGAAAGAACGGTATGTGAATGGGACAGGAAATCCTGAGGATAATATTGAAGGGATTGGGTTTTTTGAAGGGCTTGATGAGTTCCTTAATAGCTTACCAATTCTAAATGGTGTTGCAGATGATAAGGTTAAGGGTCATTAG 1554 0.4936 MDGTNRGEAERWLYTANKLLSARDLHGARSFAIRARESDPRFEATELLLAVIDTLLAGEVQIKEHLDYYAILQTLRYTQNIEYIAVQFRRLAVLLDPHRNPFAFAAHAFSLVHDAWSIFSNPHKKALYDEQLHFLTQPPPPQPIQPPQPPPPPQPIQPPPLPQQHIQPPPPSVQVNQNHDFQQRNNPNPGSFNKANLVAEERNSGPRPSRSNVDEPTRPKPAETAETEVGSFWTACPYCYAMFEYPNVYQECTLRCQNCRKGFHAVVVRSPPELGEDGSKFCSFGYIPLGFSGDFKDISGSSSEWNPVSTLFPCSMKGGSSKRGVYQREPVVYHDHDTCAAFAELSDETEDDTDDDDWWRGDDSKGRKKVRRRRKRRRTVGGSGGERGPVDTGRPKRGVQKGNASDGGGGENVDDGEAVDPASVPTKLINVEACKKAVLGGSRRRGAANLGKLDLNVEFSNEVEEAAAAAGVKERYVNGTGNPEDNIEGIGFFEGLDEFLNSLPILNGVADDKVKGH 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08600 517 Gene3D DnaJ domain 62 137 IPR036869 -
Vivi1g08600 517 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 1 382 - -
Vivi1g08600 517 SMART dnaj_3 66 124 IPR001623 -
Vivi1g08600 517 MobiDBLite consensus disorder prediction 366 380 - -
Vivi1g08600 517 ProSiteProfiles dnaJ domain profile. 67 132 IPR001623 -
Vivi1g08600 517 MobiDBLite consensus disorder prediction 136 169 - -
Vivi1g08600 517 CDD DnaJ 67 121 IPR001623 -
Vivi1g08600 517 MobiDBLite consensus disorder prediction 349 421 - -
Vivi1g08600 517 SUPERFAMILY Chaperone J-domain 61 134 IPR036869 -
Vivi1g08600 517 MobiDBLite consensus disorder prediction 170 193 - -
Vivi1g08600 517 MobiDBLite consensus disorder prediction 134 227 - -
Vivi1g08600 517 Pfam DnaJ domain 67 129 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08600 Vivi-Chr1 246526901 246528454 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08600 8 516 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT5G64360 37.288 3.77e-88 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08600 - - mtr:11433870 590.882