Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08591 ATGGAACATCATCACAGAAAACTGATCCCAGAGTTATGTGAATTGATATGCCATGGAGTAAACTCTGTATCCAAATGTTCATTGAACAATGATTGTGCTAATTGCTTCAAAAACTGTCTCAAAACCAAGCCTCTATACCCTAATTACTATTACCCTCCACCACCACCACCACCACCACAAGATCAACAACAAGAATTTCCTTTCTATTCCTCATCAAATCAAAACCAGCACAAAATCATCAATTACTTCATCATCACTCTTTCTCTTCTTGCTTTTACTTTCTTCCTTGTTTGTATTCGTGCATGTTGTGTCAATTGTAGGTCAAGAAGAACGAGAACAAGGTTAAGGACAGTGGCAAGGACAAGAACACCAGCACCAGCATCATCATCACTATCATCAAGGATTCAGCAAACTCAGGTGATGAATTTTGATGATGAACAACATGATGATTCTATTGTGGATCATCCGATTTGGTATATTCGAACTCAAGGTCTTCAACAATCGGTTATAAATGCAATTAGTGTTTGCAAGTATAAGAAAGGCGAAGGTTTGATTGAAGGAACGGATTGTTCTGTTTGTTTGAGTGAGTTTGAAGAAGATGAGAGTCTTAGGCTTTTACCTAAGTGTCATCATGCTTTTCATTTACCTTGTATTGATACTTGGCTTAGTTCTCATACTAATTGTCCTATGTGTAGAGCTCCAATTGTTAGTACTAATCCTGCAATTGAAAGGGTTGAGTCTTTGGAGTCTATTGTTGTTGATTCTCATACACAAATTGAGGTTTCTGATGAAAATAGTGGTGAAACTGAATCGAATTTAGGGCTTGAAATTAGGGCTCATGATTCTGAGTTGACGAATAGAGTAGAAGGGGAAGCCGGGCAATTGGAGTTATGTGAAAATGGAAGACCAGTTGTCGATGTGGCTAGTGTTGTTCAGCCTAGGAGATCGGTTTCTATGGATGATTCATTTGTTGCAGGTATCAATAATGTTGTTGTAACTGTTGTATCAAAAGAATGTAATGGTAATGAAGATAGTGTTTCGAAGTTTAATGGAAGTGAGAATTTGGCAACTACATCGAAAGGTAGTACTAGTAGTAGTTTTTCTTTTAGGTCAACAAGATATTTGCAGGGTGTTGCTAGTCCAATGAAGAGATCAAGTTCATACAATGGGAAGTTTCTTCTGTCTTGGTATAGCCGCAATCAGAAAAAGCCGAATGCGATTTTGAGAAACTTTTGA 1236 0.3762 MEHHHRKLIPELCELICHGVNSVSKCSLNNDCANCFKNCLKTKPLYPNYYYPPPPPPPPQDQQQEFPFYSSSNQNQHKIINYFIITLSLLAFTFFLVCIRACCVNCRSRRTRTRLRTVARTRTPAPASSSLSSRIQQTQVMNFDDEQHDDSIVDHPIWYIRTQGLQQSVINAISVCKYKKGEGLIEGTDCSVCLSEFEEDESLRLLPKCHHAFHLPCIDTWLSSHTNCPMCRAPIVSTNPAIERVESLESIVVDSHTQIEVSDENSGETESNLGLEIRAHDSELTNRVEGEAGQLELCENGRPVVDVASVVQPRRSVSMDDSFVAGINNVVVTVVSKECNGNEDSVSKFNGSENLATTSKGSTSSSFSFRSTRYLQGVASPMKRSSSYNGKFLLSWYSRNQKKPNAILRNF 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08591 411 ProSiteProfiles Zinc finger RING-type profile. 190 232 IPR001841 -
Vivi1g08591 411 CDD RING-H2_EL5-like 189 232 - -
Vivi1g08591 411 SUPERFAMILY RING/U-box 184 238 - -
Vivi1g08591 411 SMART ring_2 190 231 IPR001841 -
Vivi1g08591 411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 164 240 IPR013083 -
Vivi1g08591 411 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 73 240 IPR044675 -
Vivi1g08591 411 FunFam RING-H2 finger protein ATL54 165 238 - -
Vivi1g08591 411 Pfam Ring finger domain 189 232 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08591 Vivi-Chr1 246322544 246324600 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08591 143 291 C3H Transcription Factor Family AT1G72220 53.691 3.51e-46 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08591 - - tpra:123908556 459.529