Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08590 ATGGGATTACATCACAGAAAATTGATCCCAGAAATATGCGACTCGATTTGTCACATAAACGAAGCTTTACCTAATTGTTCATCTAACAAAGATTGCACTGTTTGCTTCAATATCTGTTTAACCAATCTCCAAAACCCTAATTACTATTCTTCACCACCACCACCACCACCGCCACCACCGCAACAAGAATTTCCTTTCTACAATTCAAATCAAAACCAGCACAAAATCATCAATTACTTCATCATCACTCTTTCTCTTCTTGCTCTTATTTTCTTCCTTGTTTGTATTCGTGCAATTTATGTCAATTGTAGGTCAAGAAGAACAAGAACAAGGTTAAGGACAGTGGCAAGGACAAGAACTCCACCACCACAATCAGCAACTCGAGAAATCGATATGAATTTTGATGATGAACAACATGATGATGATTCTATTGTGGATCATCCGATTTGGTATATTCGAACTCAAGGTCTTCAACAATCGGTTATAAATGCAATTAGTGTTTGCAAGTATAAGAAAGGCGAAGGTTTGATTGAAGGAACGGATTGTTCTGTTTGTTTGAGTGAGTTTGAAGAAGATGAGAGTCTTAGGCTTTTACCTAAGTGTCATCATGCTTTTCATTTACCTTGTATTGATACTTGGCTTAGTTCTCATACTAATTGTCCTATGTGTAGAGCTCCAATTGTTAGTACTAATCCTGCAATTGCGAGGGTTGAGTCTTTGGAATCTATTGTTGTTGATTCTGGTGCACAAATTGAGGTTTCTGATGAAAATAGGGGTGAAACTGAATCCAATTTAGGGTTTGAAAATAGGGTTTTTGATTCTGAATTGAGTAATGGGGCTGTAGAAGAGGAAGATGAAGGAGGGCAATTGGAGGTATGTGAAAATGAAAGGCGGGTTGTTGACGCGGTTAGCGGTAGTATTAGTACTCGGCCTAGGAGATCGGTTTCTATGGATGATTCTTTTGTTGCAGGTATCAATAATGATGTTGCAACTGTTATATCAAAAGAACCTAATGGTAATGAAGACAGTGTTTTGAAGTTTAATGGAAGTGAGAATTTGGCAACTACATCGAAAGGTAGTACTAGTAGTAGTTTTTCTTTTAGGTCAGCAAGATATTTGCAGGGTGTTGCTAGTCCAATGAAGAGATCAAGTTCATATAATGGGAAGTTTCTTCTGTCTTGGTATAGCCGGAATCAGAAAAAGCCAAATGCTATTCTGAGAAACTTTTGA 1230 0.3756 MGLHHRKLIPEICDSICHINEALPNCSSNKDCTVCFNICLTNLQNPNYYSSPPPPPPPPPQQEFPFYNSNQNQHKIINYFIITLSLLALIFFLVCIRAIYVNCRSRRTRTRLRTVARTRTPPPQSATREIDMNFDDEQHDDDSIVDHPIWYIRTQGLQQSVINAISVCKYKKGEGLIEGTDCSVCLSEFEEDESLRLLPKCHHAFHLPCIDTWLSSHTNCPMCRAPIVSTNPAIARVESLESIVVDSGAQIEVSDENRGETESNLGFENRVFDSELSNGAVEEEDEGGQLEVCENERRVVDAVSGSISTRPRRSVSMDDSFVAGINNDVATVISKEPNGNEDSVLKFNGSENLATTSKGSTSSSFSFRSARYLQGVASPMKRSSSYNGKFLLSWYSRNQKKPNAILRNF 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08590 409 Pfam Ring finger domain 181 224 IPR001841 -
Vivi1g08590 409 ProSiteProfiles Zinc finger RING-type profile. 182 224 IPR001841 -
Vivi1g08590 409 CDD RING-H2_EL5-like 181 224 - -
Vivi1g08590 409 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 156 231 IPR013083 -
Vivi1g08590 409 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 71 231 IPR044675 -
Vivi1g08590 409 FunFam RING-H2 finger protein ATL54 157 230 - -
Vivi1g08590 409 SUPERFAMILY RING/U-box 176 229 - -
Vivi1g08590 409 SMART ring_2 182 223 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08590 Vivi-Chr1 246317236 246318768 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08590 5 265 C3H Transcription Factor Family AT1G72220 40.925 1.41e-47 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08590 - - tpra:123908556 484.952