LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi1g08587	ATGGTTAAGGGTCATGAGTCTTGGCCTTTCCCAGAGCATGTGGCTTGGCCATCTCTTTACTTGAATGGCGCTAGCACATCGCCGGATCCTAGTTTTTGCGGTCATTCAGGGTATCTGAATCATGCTCTCAGTGCATTTCCAGGGTTCACAGCTCCTGCTACTCCAAGCCTGCAGACTGATCAGACCAATGAAGTGCGAGGGTTCGTTCAGGATCCCAAAACAGAACCGTGTTTGAAAGAAAGAAATAATTACGGAGCTATGCAAGGTACAAATCCTGCATCTTTGCAGAAGAAATTTATTATATTTGACCGGTCTGGTAACAAAACAAGGTTGTTTTATAGTCCCGTCTTCCCACTTATTCAGAGTCCAATTGATACTACTACGCAATTCGCTCAAGCTTATGAAGTTAATCAGGAGAGACGGGCAACTAGTTTTGGTCAAAAGCATTTACCAAAATACAGTCTACCGGATGAGTCTGATCAGGATCATGTAGTAAACGAAGAAAGTGAAATGCACGAAAACACAGAAGAAATCAATGCATTGCTTTATTCCGATGATGATGAAGACGACGAGGTAACAAGTACAGACCATTCTCCATTGAGTAATGAAATGACTTATTTCATACAAAAACCATTCGAGGGCATAAAGGAGGATGTCGCTAGCTCTGATTGGCCAAGCAAACGACATAAGCTAATCGACGGCGGGTATGCAAGATTACCTCCGTCTCTGAACAGTGCTAGTTCAGTAAGACTAAACGAACCATCTGAGTGTGTCAGTGATGCCGAGTCAAAGTACTCTGGCAGCCAAATGTATTTTAACACGAAAACCAAAGAGGATGATAATTCAGCAGATGGTGATATTCAATTGAGAAAGGCTAAAATCCGCGAATCACTGAAAATTCTCGAGAACATAACTCCCGGAGCAAAAGGAAAGCATCCGCTATTAGTCATCGACGAAACTATTGATTACTTAAAGTCTCTGATGTCTCAAACTGGTATGCTTGGGGTAAAATATCACTAA	1020	0.4216	MVKGHESWPFPEHVAWPSLYLNGASTSPDPSFCGHSGYLNHALSAFPGFTAPATPSLQTDQTNEVRGFVQDPKTEPCLKERNNYGAMQGTNPASLQKKFIIFDRSGNKTRLFYSPVFPLIQSPIDTTTQFAQAYEVNQERRATSFGQKHLPKYSLPDESDQDHVVNEESEMHENTEEINALLYSDDDEDDEVTSTDHSPLSNEMTYFIQKPFEGIKEDVASSDWPSKRHKLIDGGYARLPPSLNSASSVRLNEPSECVSDAESKYSGSQMYFNTKTKEDDNSADGDIQLRKAKIRESLKILENITPGAKGKHPLLVIDETIDYLKSLMSQTGMLGVKYH	339

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi1g08587	339	PANTHER	TRANSCRIPTION FACTOR BHLH145	8	337	IPR037546	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi1g08587	Vivi-Chr1	246258163	246260636	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi1g08587	77	327	Basic Helix-Loop-Helix Transcription Factor Gene Family	AT5G09460	37.218	1.29e-28	111

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi1g08587	-		-	gmx:100778385	413.69