Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08571 ATGGGATTACATCACAGAAAATTGATCTCAGAAATATGCGACTCGATTTGTCACATAAACGAAGCTTTACCTAATTGTTCATCTAACAAAGATTGCACTGTTTGCTTCAATATCTGTTTAACCAATCTCCAAAACCCTAATTACTATTCTCCACCACCACCACCACCACCACCACCTCAACAAGAATTTCCTTTCTACAATTCAAATCAAAACCAACACAAAATCACCAATTACTTCATTCTCACTCTTTCTCTTCTTGCTTTTATTTTCTTACTTGTTTCTATCCGTGCAATTTATGTCAATTTTAGGTCAAGAAGAAGAACAAGGTTAAGAGCAGTGGCAAGGACAAGAACACCTCCGCCACAATCAGCAACTCGAGAAATCGGGATGAATTTTGATGATGAACAACATGATGATGATTCTATTGTGGATCATCCAATTTGGTATATTCGAACTCAAGGTCTTCAACAATCGGTTATAAATGCAATTAATGTTTGTAAGTATAAGAAAGGCGAAGGTTTGATTGAAGGAACGGATTGTTCTGTTTGTTTGAGTGAGTTTGAAGAAGAAGAGAGTCTTAGGCTTTTACCTAAGTGTCATCATGCTTTTCATTTACCTTGTATTGATACTTGGCTTAGTTCGCATACTAATTGTCCTATGTGTAGAGCTCCAATTGTTAGTACTAACCCTACAATTGCAAGGGTTGAGTCTTTGGAATCTATTGTTGTTGATTCTGGTACACAAATTGAGGTTTCTGATGAAAATAGTGGTGAAACTGAATCCAATTTAGGGTTTGAAAATAGGGTTTTTGATTCTGAATTAAGGAATGGGGCTGTAGAAGAGGAAGATGAAGGAGGGCAGTTGGAGGTATGTGAAAATGGAAGGCCAGTTGTCGATGCAGTTAGCGGTAGTATTAGCATTCGGCCTAGGAGATCGGTTTCTATGGATGATTCATTTGTTGCAGGTATCAATAATGTTCTTGCAACTGTTGAATCAAAAGAATGTAATGGTAATGAAGATTGTGTTTCAAAGGTTAACGAAAGTGCGAATTTGGCTGGAAGTGCGAATTTGGAAGCTACATCGAAAGGTAGTAGTAGCTTTTCTTGTAGGTCAGCAAGATATTTGCAGGGTGTTCCTAGTCCAATGAAGAGATCAAGTTCATACAATGGGAAATTTCTTCTGTCTTGGTATAGCCGCAATCAGAAAAAGCCAAATGCTATTCTGAGAAGCTAA 1233 0.3755 MGLHHRKLISEICDSICHINEALPNCSSNKDCTVCFNICLTNLQNPNYYSPPPPPPPPPQQEFPFYNSNQNQHKITNYFILTLSLLAFIFLLVSIRAIYVNFRSRRRTRLRAVARTRTPPPQSATREIGMNFDDEQHDDDSIVDHPIWYIRTQGLQQSVINAINVCKYKKGEGLIEGTDCSVCLSEFEEEESLRLLPKCHHAFHLPCIDTWLSSHTNCPMCRAPIVSTNPTIARVESLESIVVDSGTQIEVSDENSGETESNLGFENRVFDSELRNGAVEEEDEGGQLEVCENGRPVVDAVSGSISIRPRRSVSMDDSFVAGINNVLATVESKECNGNEDCVSKVNESANLAGSANLEATSKGSSSFSCRSARYLQGVPSPMKRSSSYNGKFLLSWYSRNQKKPNAILRS 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08571 410 SMART ring_2 180 221 IPR001841 -
Vivi1g08571 410 SUPERFAMILY RING/U-box 173 228 - -
Vivi1g08571 410 FunFam RING-H2 finger protein ATL54 155 228 - -
Vivi1g08571 410 Pfam Ring finger domain 179 222 IPR001841 -
Vivi1g08571 410 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 68 230 IPR044675 -
Vivi1g08571 410 ProSiteProfiles Zinc finger RING-type profile. 180 222 IPR001841 -
Vivi1g08571 410 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 229 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08571 Vivi-Chr1 245781203 245782729 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08571 134 290 C3H Transcription Factor Family AT1G72220 54.088 2.93e-46 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08571 - - tpra:123908556 472.241