Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08570 ATGGAACATCATCACAGAAAACTGATCCCAGAGTTATGTGAGTTGATATGCCATGGAGTAAACTCTGTATCCAAATGTTCATTGAACAATGATTGTGCTAATTGCTTCAAAAACTGTCTCAAAACCAAACCTCTATACCCTAATTACTATTACCCTCCACCACCACCACAAGATCAACAACAAGAATTTCCTTTCTATTCCTCATCAAATCAAAACCAGCACAAAATCATCAATTACTTCATCATCACTCTTTCTCTTCTTGCTTTTATTTTCTTCCTTGTTTGTATTCGTGCATGTTATGTCAATTGTAGGTCAAGAAGAACAAGAACAACGTTAAGGACAGTGGCAAGGACAAGAACACCAGCACCAGCATCATCATCATTATCATCAAGGATTCAGCAAACTCAGGTGATGAATTTTGATGATGAACAATATGATGATTCTATTGTGGATCATCCGATTTGGTATATTCGAACTCAAGGTCTTCAACAATCGGTTATAAATGCAATTAGTGTTTGTAAGTATAAGAAAGGCGAAGGTTTGATTGAAGGAACGGATTGTTCTGTTTGTTTGAGTGAGTTTGAAGAAGATGAGAGTCTTAGGCTTTTACCTAAATGTCATCATGCTTTTCATTTACCTTGTATTGATACTTGGCTTAGATCACATACTAATTGTCCTATGTGTAGAGCTCCGATTGTTAGTACTAATCCTGCAATTGCAAGGGTTGAGTCTTTGGAATCTATTGTTGTTGATTCTCGTGCACAAATTGAGGTTTCTGATGAAAATAGTGGTGAAACTGAATCCAATTTAGGGTTTGGAAATAGGGTTTTTGATTCTGAGTTGACGAATAGAGTAGAAGGGGAAGTCGGGCAATTGGAGGTATGTGAAAATGGAAGACCAGTTGTCGATATGGCTAGTGTTGTTCGGCCTAGGAGATCGGTTTCTATGGATGATTCTTTTGTTGCAGGTATCGATAATGTTCTTGCAAGTGTTGTATCAAAAGAACCTAATGGTAATGAAGATAGTGTTTCGAAGTTTAATGGAAATGAGAATTTGGCAACTACATCGAAAGGTAGTACTAGTAGTAGTTTTTCTTTTAGGTCAGCAAGATATTTGCAGGGTGTTCCTAGTCCAATGAAGAGATCAAGTTCATACAATGGGAAGTTTCTTCTGTCTTGGTATAGCCGCAATCAGAAAAAGCCGAATGCGATTCTGAGAAACTTTTGA 1227 0.3725 MEHHHRKLIPELCELICHGVNSVSKCSLNNDCANCFKNCLKTKPLYPNYYYPPPPPQDQQQEFPFYSSSNQNQHKIINYFIITLSLLAFIFFLVCIRACYVNCRSRRTRTTLRTVARTRTPAPASSSLSSRIQQTQVMNFDDEQYDDSIVDHPIWYIRTQGLQQSVINAISVCKYKKGEGLIEGTDCSVCLSEFEEDESLRLLPKCHHAFHLPCIDTWLRSHTNCPMCRAPIVSTNPAIARVESLESIVVDSRAQIEVSDENSGETESNLGFGNRVFDSELTNRVEGEVGQLEVCENGRPVVDMASVVRPRRSVSMDDSFVAGIDNVLASVVSKEPNGNEDSVSKFNGNENLATTSKGSTSSSFSFRSARYLQGVPSPMKRSSSYNGKFLLSWYSRNQKKPNAILRNF 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08570 408 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 70 247 IPR044675 -
Vivi1g08570 408 SMART ring_2 187 228 IPR001841 -
Vivi1g08570 408 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 161 236 IPR013083 -
Vivi1g08570 408 FunFam RING-H2 finger protein ATL54 162 235 - -
Vivi1g08570 408 Pfam Ring finger domain 186 229 IPR001841 -
Vivi1g08570 408 SUPERFAMILY RING/U-box 181 234 - -
Vivi1g08570 408 ProSiteProfiles Zinc finger RING-type profile. 187 229 IPR001841 -
Vivi1g08570 408 MobiDBLite consensus disorder prediction 336 362 - -
Vivi1g08570 408 CDD RING-H2_EL5-like 186 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08570 Vivi-Chr1 245772510 245774089 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08570 136 250 C3H Transcription Factor Family AT4G33565 64.655 1.91e-45 159