Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08545 ATGACCATGGTTGTGCACTCAACACAGCTACTGATGATGGTGGTTCTTACGGTCTTTTTCACAAAAGCAGCAACTCAGTTACTATCGCTACCAAACTGCCCAACAAAGTGTGGCTCTGTCCCCATTCCCTTCCCGTTTGGAACCACCAAGGATTGTTCCTTAGACAACACCTTTCTCATCAATTGCAACAAAACATTATCTTCATCCTCTATCTCAACACATGTACCTTCCTTGCCACATAGTAACCAAACTGTCCTAAGCATCTCAATCAACGGTGAACTTCACATTGCATCGCTAGCAGCGAGAGATTGCTATGCTGAAAAGAGCAAACTTGTGAGCCAAATATATCGGGGTATCGATCTAAAACATTTTTCCATCTCGTCAACTCGAAACAAGTTGGTCGCAGTTGGCTGTGACACGGTGGGAGCACTCACAGTACATGATTATGGGGGAAACAACTACACCACAGGATGTGTGGCTTTGTGCAACAGGCTTGATGATATCGTGGCTAATGAAGCTTGTTCTGGCACTGGTTGTTGTGAGATTTCAATACCCCAAGGTCATGTGTTAACTGAAGTAATCTATGTTTCTGGAAGTATATTCAACAATCACTCAGCAGTACATGACTTCAATCCCTGTGGTTATGCTTTTTTGGTTGAAAATGGAGCCTACAAGTTCAAATCCACAGACCTCCTCAAGTTGGAGAAGAAGGAGTTTCCTGTGTTGTTGGACTGGGCAGTAGGGAACCAAACATGCCAGCAAGCTCAGAAGAATCTTTCAAACTATGCCTGTAAGGACAACAAAAGTACATGTTATGATGCGACCGAGAGATTTGGTTACCTTTGCAGATGCTTTCATGGATATTGGGGAAATCCTTACCTCATTCATGGTTGCCAAGATATTAATGAATGCATGGATTCCAATGACTGTGTTGAGGGGGCAACATGCATCAATACTCCCGGAAGCTTCCATTGTTTATGTCCGGCAAGATATGAGGGAAATGGGAAGATGAACGGAACAAGATGCAGTCAAAAGTCAAATACCAAATCAAGGAAAGAGATCATATTGATCACTGCATTGAGTGCCAGCATAAGCCTCGTAGCACTACTAGTTGGAAGCTTTTATGCATATTTGGCATTGAAGAAAAGAAAGCTCATAAAACTTAAAGAACAATTTTTTCAACAAAACGGTGGCTTATTGTTACAGCAACAACTAGTGATGCATGGAGGGTCAGATGAAACAACTAAAGTCTTCACTGTTGAGGAGCTAAATGAAGCAACCAACAACTTCGACGAAAGCAAGATCCTAGGCCAAGGTGGTCAGGGAACAGTTTACAAAGGAATTTTACAAGATAAAAGAATTGTAGCAATAAAGAAGTCCAAAATCAATGACCCAAACCAGATTGAGCCATTCATCAATGAAGTGATTGTGCTTTCTAAAATCAACCATAGAAATGTGGTAAAGCTTCTGGGTTGTTGTTTAGAGACAGAAGTTCCCTTGCTTGTTTATGAATTCATTTCTAATGGTACTGTTTATGAGCATCTTCATGATCAAAACCAATCTTTAAAGCTTTCATGGAAAACAAGATTGAGAATAGCAAAAGAAACTGCTGGAGTCCTATCATACTTGCATTCTGCCGCATCTACGCCAATCATACATAGAGACGTGAAGTCTGCAAATATACTACTAGATCACAATCTCACTGCAAAGGTTTCTGACTTTGGAGCTTCTAGGATTATTCCTCTTGATCATACCCAGATAACCACTCTAGTGCAGGGGACATTGGGGTATCTTGACCCAGAATATTTCCACACAAGCCAATTAACAGAGAAAAGTGACGTATATAGCTTTGGGGTTGTCCTAGCAGAGCTACTGACAGGAAAGAAGGCACTATCTTTTAGCAGGCCAGAGGTAGATAGAAACCTTGCAGTGTACTTTGTTTCTTCAATGAAAGAGAATCGGTTACTTCATATTTTGGACAACAATATAGATGATGTAAATACTGAGCAACTTAAGAAAGTTGCCCATATAGCAGAAAGGTGTTTAAGAGTAAAGGGTGAGGAAAGACCCACCATGAAAGAAGTGGCAATGGAACTAGAGGGAATATTAGTTTTTGAAGAGAACCATTGGGGAAGTGGCAAATTGTCTTCAGACCGAGCAGCGTCATCGGCTATCAATGTTGAAAATGGAGTTTACAGAAGCGGCACTATTTCTTCAGACTCGTATAGCATAAACCAGATATCAATGTCATTGATTGGTGGAAGATGA 2268 0.4092 MTMVVHSTQLLMMVVLTVFFTKAATQLLSLPNCPTKCGSVPIPFPFGTTKDCSLDNTFLINCNKTLSSSSISTHVPSLPHSNQTVLSISINGELHIASLAARDCYAEKSKLVSQIYRGIDLKHFSISSTRNKLVAVGCDTVGALTVHDYGGNNYTTGCVALCNRLDDIVANEACSGTGCCEISIPQGHVLTEVIYVSGSIFNNHSAVHDFNPCGYAFLVENGAYKFKSTDLLKLEKKEFPVLLDWAVGNQTCQQAQKNLSNYACKDNKSTCYDATERFGYLCRCFHGYWGNPYLIHGCQDINECMDSNDCVEGATCINTPGSFHCLCPARYEGNGKMNGTRCSQKSNTKSRKEIILITALSASISLVALLVGSFYAYLALKKRKLIKLKEQFFQQNGGLLLQQQLVMHGGSDETTKVFTVEELNEATNNFDESKILGQGGQGTVYKGILQDKRIVAIKKSKINDPNQIEPFINEVIVLSKINHRNVVKLLGCCLETEVPLLVYEFISNGTVYEHLHDQNQSLKLSWKTRLRIAKETAGVLSYLHSAASTPIIHRDVKSANILLDHNLTAKVSDFGASRIIPLDHTQITTLVQGTLGYLDPEYFHTSQLTEKSDVYSFGVVLAELLTGKKALSFSRPEVDRNLAVYFVSSMKENRLLHILDNNIDDVNTEQLKKVAHIAERCLRVKGEERPTMKEVAMELEGILVFEENHWGSGKLSSDRAASSAINVENGVYRSGTISSDSYSINQISMSLIGGR 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08545 755 Gene3D Transferase(Phosphotransferase) domain 1 506 716 - -
Vivi1g08545 755 FunFam Wall-associated receptor kinase 2 400 505 - -
Vivi1g08545 755 Gene3D Phosphorylase Kinase; domain 1 406 505 - -
Vivi1g08545 755 SMART serkin_6 430 703 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g08545 755 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 316 327 IPR000152 -
Vivi1g08545 755 ProSitePatterns Serine/Threonine protein kinases active-site signature. 551 563 IPR008271 GO:0004672|GO:0006468
Vivi1g08545 755 ProSitePatterns Calcium-binding EGF-like domain signature. 300 325 IPR018097 GO:0005509
Vivi1g08545 755 ProSiteProfiles Protein kinase domain profile. 430 703 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g08545 755 Gene3D Laminin 249 342 - -
Vivi1g08545 755 Pfam Wall-associated kinase 171 284 IPR013695 GO:0004674|GO:0016020
Vivi1g08545 755 Pfam Calcium-binding EGF domain 300 342 IPR001881 GO:0005509
Vivi1g08545 755 SMART egfca_6 300 343 IPR001881 GO:0005509
Vivi1g08545 755 FunFam Wall-associated receptor kinase 2 506 722 - -
Vivi1g08545 755 SMART egf_5 303 343 IPR000742 -
Vivi1g08545 755 SMART egf_5 251 299 IPR000742 -
Vivi1g08545 755 CDD STKc_IRAK 436 702 - -
Vivi1g08545 755 SUPERFAMILY Protein kinase-like (PK-like) 414 699 IPR011009 -
Vivi1g08545 755 ProSiteProfiles EGF-like domain profile. 300 343 IPR000742 -
Vivi1g08545 755 FunFam Fibrillin 2 295 338 - -
Vivi1g08545 755 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 27 702 IPR045274 GO:0007166
Vivi1g08545 755 Pfam Protein kinase domain 431 695 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g08545 755 CDD EGF_CA 300 333 - -
Vivi1g08545 755 SUPERFAMILY EGF/Laminin 299 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08545 Vivi-Chr1 244763777 244767511 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08545 3 714 Receptor kinase-like Gene Family AT1G21230 48.281 0.0 627
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vivi1g08545 Pkinase 3.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08545 - - mtr:25489730 1036.94