Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08544 ATGCCTATGGCTGTGCACTCAAAACAGATGTTGCTGCTGCTGCTGGTGGTCTTTTTTGCAAAAGCAGCTACTCAGTTAATATCTATGCCAAACTGTCCAACAAAGTGTGGCTCTGTCACCATTCCATTCCCATTTGGAACCACCAAGGATTGTTCCTTAGACAACACGTTTCTCATCAATTGCAACAAAACATCTTTATCTTCATCTTCTATCTCAACACAAGTACCTTCCTTGCCATATAGTAATCAAACTGTCCTAAACATCTCACTCAACGGCGAACTTCACGTTGCATGGCCAGTAGCCAGAGATTGCTATACTGAAAATAGAAAACTTGTGAACCAAACATATTGGGGTATGGATATAAATCATTTTTCCATCTCGTCAACTCGAAACAAGTTGGTCGCGGTTGGCTGTGACACGATTGGAGCCCTCTCGGCATTTGATTACGGGGGAAACAACTACACCACAGGATGTGTGGCTTTGTGTAACAGGCTTAATGATATTGTGGTCAATGAATCTTGCTCCGGCACTGGCTGTTGCGAGATTTCAATACCCCGAGGTCATGTGTTGAATAAAGTAGCCTATACTTCTGGAAGTGTATTCAGCAATCACTCTGCAGTACATGACTTCAATCCCTGTGGTTATGCGTTTTTGGTTGAAAACGGAGCCTACAACTTCGAATCCACAGACATCCTGAAGTTGGAGAAGAAGGAGTTTCCTGTGTTGTTGGACTGGGCGGTAGGGAACCAAACATGCCAGCAAGCTCAGAAGAATCTTTCAAACTATGCCTGTAAGGACAACAAAAGTACATGTTATGATGCGACCGAGAGATCTGGTTACCTTTGCAGATGCTTTCATGGATATTGGGGAAACCCTTACCTCATTGACGGATGCCAAGATATTAATGAATGCATGGAGTCCAACGACTGCGTTGAGGGAGCAACGTGCATCAACCTTCCTGGAAGCTATGATTGTTTATGTCCTGCAGAATATGAGGGAAACGGGAAGACGAACGGAACAGAATGCAGCCCAAAATCCAGTACCAACAAAACAAGGAAAGAGATCATATTGATCATTGCATTGAGTGTGAGCATAAGTTTCGCAGCACTACTGGTGGGAAGCTTTTATGCGTATTTGGCATTGAAGAAAAGAAGGCTAATTAAACTTAAAGAACAATTTTTTCAACAAAATGGTGGCATGCTGTTACAACAAAAGATAGTGAGGCGTGGAAAGTCAGCTGAAACAGCGAAAGTATTCACAGTTGAGGAGCTAAATGAAGCAACCAACAACTTCGACGAAAGCAAGATCCTAGGCCAAGGTGGTCAGGGGACAGTTTACAAAGGAGTTTTACAAGATAAAAGAATTGTAGCAATAAAGAAATCAAAAATCAGTGACAGAAAGCAGATTGAGCCGTTCATCAACGAAGTGATCGTGCTTTCCCAAATCAACCATCGGAATGTGGTAAGGCTATTGGGTTGTTGTTTAGAGACAGAAGTTCCCTTGCTTGTTTATGAATTCATATCTAATGGTACAGTTTACGAGCGTCTTCATGATCAAAACCAAATTTTAAAGCTAACGTGGAAAACAAGATTGAGAATAGCCAAAGAAACAGCTGGAGTCCTAGCATACTTGCATTCTGCTGCATCGACGCCAATCATACATAGAGATGTGAAATCTTCAAATATACTCCTAGATCATAATCTCATCGCGAAGGTTTCTGACTTTGGAGCTTCTAGGATGGTTCCTCTTGATCATACCCAGGTAACCACTCTAGTGCAGGGGACATTGGGGTATCTTGACCCAGAATATTTCCACACAAGCCAGTTGACAGAGAAAAGTGACGTCTATAGCTTCGGGGTTGTCCTAGCAGAGCTACTTACGGGAAAGAAGGCACTATCTTTTAGCAGGCCAGAGGAAGATAGAAACCTCGCAGTGTACTTTATTTCTTCGATGAAAAAGGGTCGGGTACTTCATATTTTGGACAAAAATTTAGATGGGGCTAATAGTGCGCAACTAAAGGAAGTTGCCCGTATTGCTGAAAGGTGTTTAAGGGTGAAGGGCGAGGAAAGACCCACCATGAAAGAAGTGGCAATGGAACTAGAGGGAATATTAGTTTTTGAAGAGCACCGTTGGCTAAATAGCAATTTGTCTTCAGAAGAGACTGACAACTTGCTCAGAGAAACGTCGTTGGTTATGAATGTTGAAGATGGTGGCCTTAATTCCTCGGACTCATATAGTATAAACCAGATTACGATGTCAACGATTGGTGGAAGATAA 2277 0.4238 MPMAVHSKQMLLLLLVVFFAKAATQLISMPNCPTKCGSVTIPFPFGTTKDCSLDNTFLINCNKTSLSSSSISTQVPSLPYSNQTVLNISLNGELHVAWPVARDCYTENRKLVNQTYWGMDINHFSISSTRNKLVAVGCDTIGALSAFDYGGNNYTTGCVALCNRLNDIVVNESCSGTGCCEISIPRGHVLNKVAYTSGSVFSNHSAVHDFNPCGYAFLVENGAYNFESTDILKLEKKEFPVLLDWAVGNQTCQQAQKNLSNYACKDNKSTCYDATERSGYLCRCFHGYWGNPYLIDGCQDINECMESNDCVEGATCINLPGSYDCLCPAEYEGNGKTNGTECSPKSSTNKTRKEIILIIALSVSISFAALLVGSFYAYLALKKRRLIKLKEQFFQQNGGMLLQQKIVRRGKSAETAKVFTVEELNEATNNFDESKILGQGGQGTVYKGVLQDKRIVAIKKSKISDRKQIEPFINEVIVLSQINHRNVVRLLGCCLETEVPLLVYEFISNGTVYERLHDQNQILKLTWKTRLRIAKETAGVLAYLHSAASTPIIHRDVKSSNILLDHNLIAKVSDFGASRMVPLDHTQVTTLVQGTLGYLDPEYFHTSQLTEKSDVYSFGVVLAELLTGKKALSFSRPEEDRNLAVYFISSMKKGRVLHILDKNLDGANSAQLKEVARIAERCLRVKGEERPTMKEVAMELEGILVFEEHRWLNSNLSSEETDNLLRETSLVMNVEDGGLNSSDSYSINQITMSTIGGR 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08544 758 FunFam Wall-associated receptor kinase 2 507 723 - -
Vivi1g08544 758 SMART egfca_6 300 343 IPR001881 GO:0005509
Vivi1g08544 758 CDD STKc_IRAK 437 703 - -
Vivi1g08544 758 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 27 704 IPR045274 GO:0007166
Vivi1g08544 758 Gene3D Laminin 249 342 - -
Vivi1g08544 758 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 316 327 IPR000152 -
Vivi1g08544 758 ProSitePatterns Calcium-binding EGF-like domain signature. 300 325 IPR018097 GO:0005509
Vivi1g08544 758 FunFam Fibrillin 2 295 339 - -
Vivi1g08544 758 Pfam Wall-associated receptor kinase galacturonan-binding 32 85 IPR025287 GO:0030247
Vivi1g08544 758 SMART serkin_6 431 712 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g08544 758 Gene3D Phosphorylase Kinase; domain 1 406 506 - -
Vivi1g08544 758 Pfam Calcium-binding EGF domain 300 342 IPR001881 GO:0005509
Vivi1g08544 758 ProSiteProfiles Protein kinase domain profile. 431 712 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g08544 758 SMART egf_5 251 299 IPR000742 -
Vivi1g08544 758 SMART egf_5 303 343 IPR000742 -
Vivi1g08544 758 Gene3D Transferase(Phosphotransferase) domain 1 507 721 - -
Vivi1g08544 758 ProSiteProfiles EGF-like domain profile. 300 343 IPR000742 -
Vivi1g08544 758 FunFam Wall-associated receptor kinase 2 401 506 - -
Vivi1g08544 758 Pfam Protein kinase domain 432 696 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g08544 758 CDD EGF_CA 300 333 - -
Vivi1g08544 758 SUPERFAMILY EGF/Laminin 299 335 - -
Vivi1g08544 758 ProSitePatterns Serine/Threonine protein kinases active-site signature. 552 564 IPR008271 GO:0004672|GO:0006468
Vivi1g08544 758 SUPERFAMILY Protein kinase-like (PK-like) 415 700 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08544 Vivi-Chr1 244760714 244763471 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08544 3 725 Receptor kinase-like Gene Family AT1G21230 48.098 0.0 638
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vivi1g08544 Pkinase 1.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08544 - - mtr:25489730 1006.13