Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08539 ATGATTATGCTTTCAATTTTGCCCCTTTTGAGAGTTCCAAATCTCATTGGGGGCAAGTTTGTTGAGTCAAAATCATTGGCTTTCATTGATGTTATAAACCCTGCAACGCAAGACGTTGTTTCACAAGTTCCTTTGACTACAAATGAAGAGTTTAAAGCTGCAGTGGCTGCAGCAAAGAAGGCATTTCCTTCATGGCGTAACACTCCGATCACGAAACGTCAACGTGTTATGTTGAAGTTCCAGGAGCTTATACGCCGAGATATGGATAAACTTGCCATCAGTGTGACTACCGAACAAGGAAAGACTTTAAAGGATGCACAAGGAGATGTATTCCGTGGATTAGAGGTGGTGGAACATGCTTGTGGGATGGCTACACTACAGATGGGAGAGTATGTTTCCAATGTGGCAAATGGAATTGATACTTTCAGTGTTAAAGAACCAATTGGTGTTTGTGCCGGTATCTGTCCTTTTAACTTTCCTGCGATGATTCCACTCTGGATGTTCCCAGTGGCGGTTACCTGTGGCAATACCTTCATTCTGAAACCATCAGAGAAAGATCCAGGTGCTTCTATGCTTCTTGCACAATTGGCAATGGAGGCTGGTTTGCCTGAGGGTGTCTTAAATATAGTTCATGGAGCCCATGATACTGTGAATGCTATCTGTGATCATGAAGACATCAAAGCTATATCTTTCGTTGGTTCAAATGTTGCTGGAATGCACATATACGCAAGAGCAGCAGCTAAAGGGAAGCGTGTTCAGTCTAACATGGGGGCCAAAAATCATGCAATTGTCATGCCAGATGCAAGTGTTGATGCTACCATAAATGCTTTAATTGCTGCAGGTTTTGGTGCTGCTGGACAAAGGTGCATGGCTTTAAGCACGGTTGTTTTTGTTGGAGGCTCGAAACCATGGGAAAGTATACTCGTAGAGCGTGCCAAAGCTCTTAAAGTCAATGCTGGAACTGAACCTGATGCGGACCTTGGTCCAGTCATTAGCATACAGGCAAAGGAGCGAATACACAAATTAATTCAATCTGGATTTGAAAGTGGGGCCAGACTATTGCTTGATGGAAGAAGTATAGTGGTTCCCGGATATGAATCCGGCAATTTTATTGGCCCAACCATCTTAGCCGATGTCACTTCCGACATGGAGTGCTACAAGGAGGAGATTTTTGGCCCTGTTCTTCTTCTCACGGAGGCTAATAGCTTGGACGAGGCCATAAAGTTTGTTAATGAAAACAAGTATGGAAATGGTGCTACTATATTCACTAGATCCGGTGTAGCTGCTAGGAAATTTCAGACCGAAATCGAGGCAGGCCAAGTGGGCATCAACGTTCCTATTCCTGTTCCTTTGCCATTTTTCTCCTTTACCGGAAACAAAGCATCATTTGCAGGCGATCTCAATTTCTACGGCAAGGCAGGGGTTAACTTTTATACACAAATCAAAACAATAACTCAGAACTGGAAGGAATCGGTTAACGAGGACAAGATTAACATGGCAATGCCAACTTCTCAAAAATCTTAA 1524 0.4331 MIMLSILPLLRVPNLIGGKFVESKSLAFIDVINPATQDVVSQVPLTTNEEFKAAVAAAKKAFPSWRNTPITKRQRVMLKFQELIRRDMDKLAISVTTEQGKTLKDAQGDVFRGLEVVEHACGMATLQMGEYVSNVANGIDTFSVKEPIGVCAGICPFNFPAMIPLWMFPVAVTCGNTFILKPSEKDPGASMLLAQLAMEAGLPEGVLNIVHGAHDTVNAICDHEDIKAISFVGSNVAGMHIYARAAAKGKRVQSNMGAKNHAIVMPDASVDATINALIAAGFGAAGQRCMALSTVVFVGGSKPWESILVERAKALKVNAGTEPDADLGPVISIQAKERIHKLIQSGFESGARLLLDGRSIVVPGYESGNFIGPTILADVTSDMECYKEEIFGPVLLLTEANSLDEAIKFVNENKYGNGATIFTRSGVAARKFQTEIEAGQVGINVPIPVPLPFFSFTGNKASFAGDLNFYGKAGVNFYTQIKTITQNWKESVNEDKINMAMPTSQKS 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08539 507 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 257 457 IPR016163 GO:0016620
Vivi1g08539 507 FunFam Methylmalonate-semialdehyde dehydrogenase (Acylating) 257 457 - -
Vivi1g08539 507 CDD ALDH_F6_MMSDH 12 488 IPR010061 GO:0004491
Vivi1g08539 507 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 16 465 IPR016162 GO:0016491
Vivi1g08539 507 FunFam Methylmalonate-semialdehyde dehydrogenase [acylating] 16 263 - -
Vivi1g08539 507 Pfam Aldehyde dehydrogenase family 20 484 IPR015590 GO:0016491
Vivi1g08539 507 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 10 504 IPR010061 GO:0004491
Vivi1g08539 507 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 282 293 IPR016160 GO:0016491
Vivi1g08539 507 NCBIfam CoA-acylating methylmalonate-semialdehyde dehydrogenase 14 488 IPR010061 GO:0004491
Vivi1g08539 507 SUPERFAMILY ALDH-like 5 489 IPR016161 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08539 Vivi-Chr1 244595700 244599708 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08539 11 472 Aldehyde Dehydrogenase Gene Family AT2G14170 82.900 0.0 799
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08539 K00140 - gmx:100783569 884.019