Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08538 ATGGCAACTTCTCAATTTTCAACTCATCCTAATTCCCTGAGAGTTCCAAATCTCATTGGGGGCAAGTTTGTTGAGTCAAAATCATTGGCTTTCATTGATGTTATAAACCCTGCAACGCAAGACGTTGTTTCACAAGTTCCTTTGACTACAAATGAAGAGTTTAAAGCTGCAGTGGCTGCAGCAAAGAAGGCATTTCCTTCATGGCGTAACACTCCGATCACGAAACGTCAACGTGTTATGTTGAAGTTCCAGGAGCTTATACGCCGAGATATGGATAAACTTGCCATCAGTGTGACTACCGAACAAGGAAAGACTTTAAAGGATGCACAAGGAGATGTATTCCGTGGATTAGAGGTGGTGGAACATGCTTGTGGGATGGCTACACTACAGATGGGAGAGTATGTTTCCAATGTGGCAAATGGAATTGATACTTTCAGTGTTAAAGAACCAATTGGTGTTTGTGCCGGTATCTGTCCTTTTAACTTTCCTGCGATGATTCCACTCTGGATGTTCCCAGTGGCGGTTACCTGTGGCAATACCTTCATTCTGAAACCATCAGAGAAAGATCCAGGTGCTTCTATGCTTCTTGCACAATTGGCAATGGAGGCTGGTTTGCCTGAGGGTGTCTTAAATATAGTTCATGGAGCCCATGATACTGTGAATGCTATCTGTGATCATGAAGACATCAAAGCTATATCTTTCGTTGGTTCAAATGTTGCTGGAATGCACATATACGCAAGAGCAGCAGCTAAAGGGAAGCGTGTTCAGTCTAACATGGGGGCCAAAAATCATGCAATTGTCATGCCAGATGCAAGTGTTGATGCTACCATAAATGCTTTAATTGCTGCAGGTTTTGGTGCTGCTGGACAAAGGTGCATGGCTTTAAGCACGGTTGTTTTTGTTGGAGGCTCGAAACCATGGGAAAGTATACTCGTAGAGCGTGCCAAAGCTCTTAAAGTCAATGCTGGAACTGAACCTGATGCGGACCTTGGTCCAGTCATTAGCATACAGGCAAAGGAGCGAATACACAAATTAATTCAATCTGGATTTGAAAGTGGGGCCAGACTATTGCTTGATGGAAGAAGTATAGTGGTTCCCGGATATGAATCCGGCAATTTTATTGGCCCAACCATCTTAGCCGATGTCACTTCCGACATGGAGTGCTACAAGGAGGAGATTTTTGGCCCTGTTCTTCTTCTCACGGAGGCTAATAGCTTGGACGAGGCCATAAAGTTTGTTAATGAAAACAAGTATGGAAATGGTGCTACTATATTCACTAGATCCGGTGTAGCTGCTAGGAAATTTCAGACCGAAATCGAGGCAGGCCAAGTGGGCATCAACGTTCCTATTCCTGTTCCTTTGCCATTTTTCTCCTTTACCGGAAACAAAGCATCATTTGCAGGCGATCTCAATTTCTACGGCAAGGCAGGGGTTAACTTTTATACACAAATCAAAACAATAACTCAGAACTGGAAGGAATCGGTTAACGAGGACAAGATTAACATGGCAATGCCAACTTCTCAAAAATCTTAA 1533 0.4338 MATSQFSTHPNSLRVPNLIGGKFVESKSLAFIDVINPATQDVVSQVPLTTNEEFKAAVAAAKKAFPSWRNTPITKRQRVMLKFQELIRRDMDKLAISVTTEQGKTLKDAQGDVFRGLEVVEHACGMATLQMGEYVSNVANGIDTFSVKEPIGVCAGICPFNFPAMIPLWMFPVAVTCGNTFILKPSEKDPGASMLLAQLAMEAGLPEGVLNIVHGAHDTVNAICDHEDIKAISFVGSNVAGMHIYARAAAKGKRVQSNMGAKNHAIVMPDASVDATINALIAAGFGAAGQRCMALSTVVFVGGSKPWESILVERAKALKVNAGTEPDADLGPVISIQAKERIHKLIQSGFESGARLLLDGRSIVVPGYESGNFIGPTILADVTSDMECYKEEIFGPVLLLTEANSLDEAIKFVNENKYGNGATIFTRSGVAARKFQTEIEAGQVGINVPIPVPLPFFSFTGNKASFAGDLNFYGKAGVNFYTQIKTITQNWKESVNEDKINMAMPTSQKS 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08538 510 SUPERFAMILY ALDH-like 10 492 IPR016161 GO:0016491
Vivi1g08538 510 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 285 296 IPR016160 GO:0016491
Vivi1g08538 510 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 260 460 IPR016163 GO:0016620
Vivi1g08538 510 FunFam Methylmalonate-semialdehyde dehydrogenase [acylating] 19 266 - -
Vivi1g08538 510 FunFam Methylmalonate-semialdehyde dehydrogenase (Acylating) 260 460 - -
Vivi1g08538 510 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 6 507 IPR010061 GO:0004491
Vivi1g08538 510 NCBIfam CoA-acylating methylmalonate-semialdehyde dehydrogenase 17 491 IPR010061 GO:0004491
Vivi1g08538 510 CDD ALDH_F6_MMSDH 15 491 IPR010061 GO:0004491
Vivi1g08538 510 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 19 468 IPR016162 GO:0016491
Vivi1g08538 510 Pfam Aldehyde dehydrogenase family 23 487 IPR015590 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08538 Vivi-Chr1 244595571 244599708 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08538 7 475 Aldehyde Dehydrogenase Gene Family AT2G14170 82.128 0.0 800
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08538 K00140 - gmx:100783569 885.174