Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08532 ATGGGAAGAGGAAAGATTGCGATTCGAAGGATTGATAATTCAACAAGCAGGCAAGTAACTTTCTCAAAAAGAAGAAATGGATTATTGAAGAAAGCCAAAGAGTTATCCATTCTCTGTGATGCTGAAGTTGGATTGATTGTTTTTTCAAGCACTGGAAGGCTTTATGATTACTCAAGCACAAGCATGAAGGCTGTTATCGAGCGCTATAGCAAACAGAAAGAAGAACAACATCAGCTAATGAATCCTGCTTCAGAAGTCAAGTTTTGGCAGACAGAGGCAGCTGGACTAAGACAACAACTGCAGTACCTGCAAGAAAGCCATAGGCAATTGATGGGTGAAGGACTTTCTGGTTTGGGTATTAAAGAACTACAAAATCTGGAAAATCAACTGGAAATTAGTCTCAAGGGTGTTCGCATGAAAAAGGATCACATTTTGACTAATGAGATTAAAGAACTACACCAAAAGGGAACTCTTGTTCATCAAGAAAATGTCGAACTCCATAAAAAAATGGACTTCATCCAAAAAGAAAATGCAGAGCTACAGAAGAAGGTAAATGAAGAAAATGTGGCATCGAATCTTTCATTTACTATCAGAAATGGATATGAATTACATGCGCCGATCAGTCTCCAGCTAAGCCAGCCACAGGCTCAATACAGTGAACCAGTAACAAAAGCCATGAAATTAGGGTATTCTCTTGAACTAATAATGTATTTCATATATATCCGATCTACGCTATTTTTGTTTAGAAACTAA 753 0.3758 MGRGKIAIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLIVFSSTGRLYDYSSTSMKAVIERYSKQKEEQHQLMNPASEVKFWQTEAAGLRQQLQYLQESHRQLMGEGLSGLGIKELQNLENQLEISLKGVRMKKDHILTNEIKELHQKGTLVHQENVELHKKMDFIQKENAELQKKVNEENVASNLSFTIRNGYELHAPISLQLSQPQAQYSEPVTKAMKLGYSLELIMYFIYIRSTLFLFRN 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08532 250 SUPERFAMILY SRF-like 2 86 IPR036879 GO:0003677|GO:0046983
Vivi1g08532 250 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vivi1g08532 250 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Vivi1g08532 250 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vivi1g08532 250 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi1g08532 250 Coils Coil 120 140 - -
Vivi1g08532 250 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Vivi1g08532 250 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vivi1g08532 250 Coils Coil 163 190 - -
Vivi1g08532 250 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi1g08532 250 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vivi1g08532 250 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vivi1g08532 250 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vivi1g08532 250 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vivi1g08532 250 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 171 - -
Vivi1g08532 250 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08532 Vivi-Chr1 244280456 244307493 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08532 1 234 MADS-box Gene Family AT2G14210 62.605 7.15e-91 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vivi1g08532 K-box 5.4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08532 K09264 - gmx:100808145 387.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g08532 1 244280456 244307493 Vivi1g08532 1 244280456 244307493 ECH