Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08530 ATGGGAAGAGGAAAGATTGCGATTCGAAGGATTGATAATTCAACAAGCAGGCAAGTAACTTTCTCAAAGAGAAGAAATGGATTGTTGAAGAAAGCCAAAGAGCTATCCATTCTGTGTGATGCTGAAGTTGGATTGATTGTTTTTTCAAGCACCGGAAGGCTCTATGATTATTCAAGCACTAGCATGAAGGCGGTTATTGAGCGCTATAACAAACAGAAAGAAGAACAACATCAGCTAATGAATCCTGCTTCAGAAGTCAAGTTTTGGCAGACAGAAGCAGCTGGACTAAGACAACAACTGCAGTACCTGCAAGAAAGCCATAGGCAATTGATGGGTGAAGGACTTTCTGGATTGGGTATTAAAGAACTACAAAATCTGGAAAATCAACTGGAGATTAGTCTCAAGGGTGTTCGAATGAAAAAGGATCACATTTTGACTAATGAGATTAAAGAACTACACCAAAAGGGAAGTCTTGTCCATCAAGAAAATGTAGAACTCCATAAGAAAATGGACTTCATCCAGAAAGAAAATGCAGAGCTACAGAAGAAGGTTTATGAAGAAAGGAGTACAAATGAAGAAAATGTGGCATCCAATCTTTCATGCACTATCAGAAATGCTTATGATTTGCATGCGTCGATCAGTCTCCAACTAAGCCAACCACAGGCTCAATACAGTGAACCAGCAACGAAAGCCATGAAACTAGGGTATTCCCTCGAACTAATAACGTACCAAATATAG 738 0.3943 MGRGKIAIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLIVFSSTGRLYDYSSTSMKAVIERYNKQKEEQHQLMNPASEVKFWQTEAAGLRQQLQYLQESHRQLMGEGLSGLGIKELQNLENQLEISLKGVRMKKDHILTNEIKELHQKGSLVHQENVELHKKMDFIQKENAELQKKVYEERSTNEENVASNLSCTIRNAYDLHASISLQLSQPQAQYSEPATKAMKLGYSLELITYQI 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08530 245 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 178 - -
Vivi1g08530 245 FunFam AGAMOUS-like 21 13 87 - -
Vivi1g08530 245 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vivi1g08530 245 SUPERFAMILY SRF-like 2 86 IPR036879 GO:0003677|GO:0046983
Vivi1g08530 245 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vivi1g08530 245 Coils Coil 120 140 - -
Vivi1g08530 245 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Vivi1g08530 245 Coils Coil 163 195 - -
Vivi1g08530 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vivi1g08530 245 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vivi1g08530 245 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vivi1g08530 245 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vivi1g08530 245 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi1g08530 245 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vivi1g08530 245 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi1g08530 245 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08530 Vivi-Chr1 244152852 244171886 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08530 1 240 MADS-box Gene Family AT2G14210 61.411 5.81e-91 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vivi1g08530 K-box 2.8e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08530 K09264 - gmx:100808145 401.749