Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08525 ATGGGAAGAGGAAAGATTGCGATTCGAAGGATTGATAATTCAACAAGCAGGCAAGTAACTTTCTCAAAGAGAAGAAATGGATTATTGAAGAAAGCCAAAGAGTTATCCATTCTCTGTGATGCTGAAGTTGGATTGATTGTTTTTTCAAGCACTGGAAGGCTCTATGACTACTCAAGCACAAGCATGAAAGCCGTTATCGAGCGCTTTAACAAACACAAAGAAGAACAACATCAACTAATGAATCCTGCTTCAGAAGTCAAGTTTTGGCAAACAGAAGCAGCTGGCCTGAGACAACAACTGCAGTACCTGCAAGAAAGCCATAGGCAATTGATGGGTGAAGGACTTACTGGCTTGGGAATTAAAGAACTACAAAATCTGGAAAGTCAACTGGAGATTAGTCTCAAGGGTGTTCGAATGAAAAAGGATTACATTTTGACTAATGAAATTAAAGAACTACACCAAAAGGGAACTCTTGTCCATCAAGAAAATGTAGAACTCCACAAAAAAATGGACTTCATCCAGAAAGAAAATGCAGAGCTACAGAAGAAGGTTTATGAAGCAAGGGTTACAAATGAAGAAAATGTGGCATCAAATCTATCATGCACTATCAGAAATGGATATGATTTACATGCACCTATCAGTCTCCAGCTAAGCCAACCACAGGCTCAATACAGTGAACCAGCAATCAAAGCCATGAAATTAGGATTACAGCTGCATTCCTAA 723 0.39 MGRGKIAIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLIVFSSTGRLYDYSSTSMKAVIERFNKHKEEQHQLMNPASEVKFWQTEAAGLRQQLQYLQESHRQLMGEGLTGLGIKELQNLESQLEISLKGVRMKKDYILTNEIKELHQKGTLVHQENVELHKKMDFIQKENAELQKKVYEARVTNEENVASNLSCTIRNGYDLHAPISLQLSQPQAQYSEPAIKAMKLGLQLHS 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08525 240 SUPERFAMILY SRF-like 2 88 IPR036879 GO:0003677|GO:0046983
Vivi1g08525 240 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vivi1g08525 240 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vivi1g08525 240 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vivi1g08525 240 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi1g08525 240 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vivi1g08525 240 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vivi1g08525 240 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Vivi1g08525 240 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Vivi1g08525 240 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi1g08525 240 Coils Coil 163 195 - -
Vivi1g08525 240 Gene3D - 13 91 IPR036879 GO:0003677|GO:0046983
Vivi1g08525 240 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vivi1g08525 240 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vivi1g08525 240 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08525 Vivi-Chr1 243906267 243956861 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08525 1 224 MADS-box Gene Family AT2G22630 60.889 1.58e-90 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vivi1g08525 K-box 4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08525 K09264 - gmx:100805092 394.43