Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08518 ATGGAGAACTATTCATACCAATCATACCCAGATTCAGGAGAATCTTCCCCTCGTTCCAGAGAAATCGACTTCGAAAACCCACCCACACCAATACCATGGGAAGAACAACAACAACATCAACAACAACAGCACCAACAACAAAGTAGTAACAACTACAAAGCCAAGTTCATGTGCAGCTACGGTGGCAAGATCCAACCACGAACACACGACAACCAACTCTCTTACGTCGGTGGCGAAACCAAAATCCTAGCCGTTGATCGCACCATCAAATTCTCATCAATGATCTCTAAACTCTGTTCTCTCATCGAAGCACCTGATGTTTCTTTCAAGTACCAACTACCTGGCGAGGATCTCGATGCTCTTATTTCTGTTACAAACGACGATGATCTCGACCACATGATGCATGAATACGATCGTCTCTACCGTGCTTCCGCTAGACCCGCACGTATGCGATTATTCCTCTTTGTTAACGATTCTGATTCTGTTTCAAATAGTTCTAATTCTAATTCTAACCCACCCGACCCGGTTAAAGGTTCTAATGTTGATTATCTGTTTGGAATTGAAAAGGTCGCTCTTGCTCCACCCGTTGTTGCTCCGGTTCCGGCACGGGTGCCGGAACCGGTTTCTGCACCGCCTGAGTATGTTCTTCGACCCGGTTTGAATTTGAATCCATCTGATCGGGTTATTGGTTCGGATCCGGGTTTGGATATTCAGAGGCAGTTACAGCGGATGCAGATAGCGGAGAATGAACAGAATGCGTATCGGAGAAAAAGTGAAGAGAACCACCTCGTCGGAAATTATCCTCCCGGAGATTATTACGTTCAGAAAACTACGCCTGAGAAATTTCCGATGACGAACTTCACACCACCACCACCACCACCGCAGCAGCAGCATCACACTGGTTACTGGCAGGAGAAGCCAGTTTCCGGCGAGGCTTATCCACCGGTTGCTCCTGGAGGAGGTGACCAGCCTCAGCCGGTTTATATGGTACCAGCGCCGGGGAATTACTATCATGCGCCGGTGATGCGTCCGCCGGTGAGTCAAGGATACTACGCGGTGCAACGAATGTCATCTGAGGGTTACCGTGAAGCGCAGGTTTACGGCGGAGCTCCACCCTCCAAAGCGCCACCGGGAGTGTCGGCGACATATGCAGCGGCGCAACCGGTTAAAGGTCCGGCGTATGCGGAAGGTGTTAGTGTGGTTCGATCAACTGGATTACCGGATAATACACCAGGTTCAAATTCGTACGCACAGGTGGCGTATGATAGTGCCAGTGGTAGACAAGTTTATTATAATACGCCGGGTGGTGTAGTACACCCGCCGCCGTATCAAGGAGTTGCTGCACCCGTCACCACTGACGTTAAAGTGATGAGCAAGATTTCTCAAGGTTCAGTGTGA 1398 0.4943 MENYSYQSYPDSGESSPRSREIDFENPPTPIPWEEQQQHQQQQHQQQSSNNYKAKFMCSYGGKIQPRTHDNQLSYVGGETKILAVDRTIKFSSMISKLCSLIEAPDVSFKYQLPGEDLDALISVTNDDDLDHMMHEYDRLYRASARPARMRLFLFVNDSDSVSNSSNSNSNPPDPVKGSNVDYLFGIEKVALAPPVVAPVPARVPEPVSAPPEYVLRPGLNLNPSDRVIGSDPGLDIQRQLQRMQIAENEQNAYRRKSEENHLVGNYPPGDYYVQKTTPEKFPMTNFTPPPPPPQQQHHTGYWQEKPVSGEAYPPVAPGGGDQPQPVYMVPAPGNYYHAPVMRPPVSQGYYAVQRMSSEGYREAQVYGGAPPSKAPPGVSATYAAAQPVKGPAYAEGVSVVRSTGLPDNTPGSNSYAQVAYDSASGRQVYYNTPGGVVHPPPYQGVAAPVTTDVKVMSKISQGSV 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08518 465 PANTHER OS05G0427100 PROTEIN-RELATED 9 349 - -
Vivi1g08518 465 MobiDBLite consensus disorder prediction 1 15 - -
Vivi1g08518 465 Gene3D - 74 158 - -
Vivi1g08518 465 MobiDBLite consensus disorder prediction 31 50 - -
Vivi1g08518 465 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 73 157 - -
Vivi1g08518 465 SMART PB1_new 68 157 IPR000270 GO:0005515
Vivi1g08518 465 SUPERFAMILY CAD & PB1 domains 69 166 - -
Vivi1g08518 465 MobiDBLite consensus disorder prediction 1 50 - -
Vivi1g08518 465 CDD PB1_UP2 57 155 - -
Vivi1g08518 465 Pfam PB1 domain 69 156 IPR000270 GO:0005515
Vivi1g08518 465 Coils Coil 237 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08518 Vivi-Chr1 243625949 243627716 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08518 52 155 MAP Kinase Kinase Kinase AT5G57610 49.038 4.61e-26 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08518 - - var:108341806 519.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g08518 1 243625949 243627716 Vivi1g08518 1 243625949 243627716 ECH