Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08506 ATGAGTTCTCATATGGAAATTTCATCAATCAGAGGGTTACCTGAATTGGGATTAATAGAGGATGCTAACTTTCTACATCAATGGAATAATCACTTAAGTTCTATTGATACAAATAACTTAAGTGCTTCTGAGTTTGGAGATGCTTTACAGAAACATTTTCTGTCAAATAATCAAAACTTCAACAACAAAACATGCATGGAAGCTTCTGCGAAACAGCTTAAAAATAACAGCTGGAATTACAACAATAGTAATCTTCAAACATCAGAGTCACAGTATGCGAATCTTCTTTCGTTTGCTGATTCGAATTACGCGAATCAGTTGGGACTATTGAAGCCGAAGTCTGAGATGATGGCGTGTCCGAAAATCGATAATAGTAGTAGTACTACTATTGCGAATATGTTGATGAATCAAGGTAACTTGTTGGAGAATCATGAAAACCATGTGTTTAAGGCTTTTCATGAGGCGAAAGATGTTGAGACGAGACCGAGTAAACTTTCTCAAGCTCATGATCACATTGTAGCTGAAAGGAAGCGCCGCGAGAAGCTTAGCCAGCGGTTCATCGCTCTATCGGCTCTTGTTCCAAACCTAAAGAAGATGGACAAAGCTTCTGTTCTTGGAGAAGCTATAAGGTACTTGAAGCAAATGGAAGAGAAAGTGAGTGTTCTTGAGGAGGAACAGAAGAGGAAGAAAACTGTGGAATCTGTTGTAATTGTCAAGAAATCTAAACTTTCTTATGATGCTGAAGACACTTGTTCAGAGAGTGATAATACATTTGATGAAACATTACCTGAAATTGAAGCAAGATTTTGTGAAAGAAGTGTTCTCATAAGACTTCATTGTTTGAAAAGTCAAGGAGTTATAGAGAAAACAGTGAGTGAAATTGAAAAACTTCATCTAAAAGTCATCAATAGCAGTGCCTTGACTTTTGGGAATTTCACCCTTGATATCACCATTATTGCTCAGATGGATGTTGGATTTTGCATGACATTGAAGGAACTTGTGAGAAAGCTACGATCAGCATATTCATCTTTCATGTGA 1038 0.3709 MSSHMEISSIRGLPELGLIEDANFLHQWNNHLSSIDTNNLSASEFGDALQKHFLSNNQNFNNKTCMEASAKQLKNNSWNYNNSNLQTSESQYANLLSFADSNYANQLGLLKPKSEMMACPKIDNSSSTTIANMLMNQGNLLENHENHVFKAFHEAKDVETRPSKLSQAHDHIVAERKRREKLSQRFIALSALVPNLKKMDKASVLGEAIRYLKQMEEKVSVLEEEQKRKKTVESVVIVKKSKLSYDAEDTCSESDNTFDETLPEIEARFCERSVLIRLHCLKSQGVIEKTVSEIEKLHLKVINSSALTFGNFTLDITIIAQMDVGFCMTLKELVRKLRSAYSSFM 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08506 345 Gene3D - 157 231 IPR036638 GO:0046983
Vivi1g08506 345 SMART finulus 172 221 IPR011598 GO:0046983
Vivi1g08506 345 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 171 229 IPR036638 GO:0046983
Vivi1g08506 345 Coils Coil 205 232 - -
Vivi1g08506 345 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 166 215 IPR011598 GO:0046983
Vivi1g08506 345 PANTHER BHLH TRANSCRIPTION FACTOR 43 342 - -
Vivi1g08506 345 Pfam Helix-loop-helix DNA-binding domain 171 216 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08506 Vivi-Chr1 243424750 243427195 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08506 166 345 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 55.738 8.32e-58 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi1g08506 HLH 8.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08506 - - gmx:100798018 453.366