Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08504 ATGTTACACTACCTAGTACTTTTCTATACATGTCTGAAACCAATCTCAATTTTTCAACTCAGAACCCACCCACCACTTTCCTCACTCTTATTACCCCACTCACCCAACAAAATCTCCGCCACCGCCATGTTCACCGGAGCACTTCTCCGGCACGGTTCACCACTCCTCACCACTCTCTTTTTCCTCTCCCTCATCACCCTCTCTCACTCAAACGACCTTCAATCTCTCCTCATCTTCAAATCCTCCATCCAATCTTCCAATCCAAACATCTTCACTTCATGGAACCTCTCAAATTCACCCTGCAACTTCACCGGAATCACCTGCAACTCCAAAGGCTCCGTCACAGAAATCAACCTTCCAATGAAAAATCTCACCGGCACTATTCCATTTGATTCAATCTGCAAACTCCAATCTCTCGAGAAAATCTCATTAGAATCCAACTTTCTCAGCGGAACCATAACCGAAGATTTGAAGAATTGCGTAAACTTGAAGTACTTAGACTTAGGTGGAAACTCATTCACCGGAACAGTACCTGAGTTTTCATCTTTGAACAAGTTAGAGTACTTGAATCTAAATCTAAGTGGAGTTTCTGGTAAATTTCCATGGAAATCATTGGAAAATCTTACAACTCTCACTTTCTTAAGCCTTGGTGATAACTTATTTGAAAAAGCTCCTTTTCCTATGGAGATTCTAAGCCTTGAGAATTTGTATTGGCTTTATCTAACCAATATCAGCATCTTTGGTAGAATCCCAATTGGTATCGGAAATCTTACACAGCTTCAGCATTTCGAGATTTCTGATAACAATTTATCTGGTGAGATTCCTCATGATATTGGAAAGCTTAAGAATCTAAGGCAACTTGAGATATACGACAACCGTTTGAGCGGAAGAATCCCGGTTGGATTCGGTAATCTTACCAATCTTGTTCAGTTCGATGCTTCGAATAATAGTCTAGAAGGTGATCTTTCTGAGATAAAGTCGTTGGAGAATCTTCAATCCTTGCAGCTTTTTCAGAACAGATTCTCAGGAGAGATTCCACAAGAGCTTGGTGATTTTAAGTATCTTACTGAACTTTCTCTCTATGATAACAAACTCACTGGTTTTCTTCCGCAGAAGCTCGGTTCGTGGGCTGGAATGGATTTCGTAGATGTTTCTGACAATTTACTATCGGGTCCTATTCCACCTGATATGTGCAAGAACAATCGAATTACTGATATAGCACTTTTGGATAACAGTTTCACAGGAAGTATACCAGAAAACTACGCGAATTGCACGGCTTTGGTTCGGTTTAGAGTAACAAAGAACTCTCTTTCAGGTGCTGTTCCGAAAGGTATATGGGGTTTGCCAAATTTGGAACTTTTTGATCTTGGAAGGAACCATTTTGAAGGTTCTATAGGTTCTGATATAGGAAAAGCTAAATCTCTAGCTCAGCTTTTTTTGTCTGATAATCAATTCTCAGGTGAGTTGCCTTTGGAAATCTCTGAGGCTTCTTCGTTGTTTTCGATTCAGTTAAGTTCGAATCGAGTTTCTGGTCACATACCGGAAACTATAGGCAAGTTGAAGAAACTAACTAGTCTTAGTTTGAATAACAACAATCTTTCTGGTATTCTACCAGATTCTATTGGCTCTTGTGTTTCTCTAACCGAAGTAAACCTCGCTGAAAATTCGATTTCTGGTGTGATTCCGGTTAGCATAGGTTCTTTGCCTACGCTTAATTCGTTGAATTTGTCGTCAAACGAGTTTTCTGGTGAGATTCCGTCGAGTTTATCGTCTCTTAAACTTAGTCTTCTTGATTTATCAGACAATCGGTTTTTCGGTTCCATACCAGACTCACTTGCTATTTCGGCTTTCAAGGATGGTTTCATGGGAAATCCTGGTTTGTGCAGTCAGATTTTGAAGAATTTTAAGCCATGTTCAGTGGAATCTGTCGGCTCGAGGCAAGCGCGAAACCTCGTGTTCTTTTTCATTGCTGGTTTAATGGTTCTGATTCTTTCGTTATCGTATTTCCTCTTCATGAGACTTAAACAGAAGACTAAGTTTGAGAAGCAAGTGCTTAAGACTAATTCTTGGAATTTCAAGCAGTACCATGTGTTGAACATCAATGAGAATGAGATTATTGAAGGAATCAAAGCTGAGAATGTGATTGGAAAAGGAGGGTCAGGGAATGTTTACAAGGTTGAGCTAAGAAGCGGCGAAGTTTTCGCTGTCAAACACATATGGACTTCGAATCCAAGAAGTGATTATAGGAGTAGTTCAGCAATGCTAAAAAGGAATTCCTGTTCGCCCGAGTATGACGCCGAGGTTGCAACTTTGAGTTCTGTAAGGCATGTGAATGTGGTGAAGCTATATTGTAGCATCACGAGTGAAGATAGTAGTTTGCTTGTTTACGAGTTTTTACCGAATGGGAGTTTGTGGGATAGGTTGCATACTTGTAAGAAGACTCAGATGGGGTGGGAGGTTCGGTACGATATTGCATTGGGTTCGGCTAGAGGTTTGGAGTATTTGCATCATGGTTGTGATAGACCTGTTATGCATAGGGATGTTAAGTCGAGTAACATATTGCTCGACGAGGAATGGAAGCCGAGGATTGCTGATTTTGGATTAGCGAAGATTGTGCACGGAGGAGCTGGTAATTGGACTCATGTCATTGCTGGAACACTCGGCTACATGGCTCCTGAATATGCCTACACTTGTAAGGTGACGGAGAAGAGTGATGTTTACAGCTTTGGCGTAGTACTAATGGAGTTAGTAACAGGGAAGAAGCCTGTGGAGCCGGAGTTCGGAGAGAATAAGGATATCGTCAGTTGGGTATGCAGCAATATTAGGAGTAAAGAAAGTATACTTGAATTGGTGGATTCTACGATCGCAAAGCATTTCAAAGAAGGTGCTATTAAGGTGTTGAGAATCGCGACATTGTGCACGGCGAAAGTTCCATCTTCAAGACCGTCGATGAGAATGTTGGTTCAAATGCTGGAAGACGCCGATCCGTCTTCGTCAAAAGTTGTAGTCACCATAGATAGTTAA 3024 0.4114 MLHYLVLFYTCLKPISIFQLRTHPPLSSLLLPHSPNKISATAMFTGALLRHGSPLLTTLFFLSLITLSHSNDLQSLLIFKSSIQSSNPNIFTSWNLSNSPCNFTGITCNSKGSVTEINLPMKNLTGTIPFDSICKLQSLEKISLESNFLSGTITEDLKNCVNLKYLDLGGNSFTGTVPEFSSLNKLEYLNLNLSGVSGKFPWKSLENLTTLTFLSLGDNLFEKAPFPMEILSLENLYWLYLTNISIFGRIPIGIGNLTQLQHFEISDNNLSGEIPHDIGKLKNLRQLEIYDNRLSGRIPVGFGNLTNLVQFDASNNSLEGDLSEIKSLENLQSLQLFQNRFSGEIPQELGDFKYLTELSLYDNKLTGFLPQKLGSWAGMDFVDVSDNLLSGPIPPDMCKNNRITDIALLDNSFTGSIPENYANCTALVRFRVTKNSLSGAVPKGIWGLPNLELFDLGRNHFEGSIGSDIGKAKSLAQLFLSDNQFSGELPLEISEASSLFSIQLSSNRVSGHIPETIGKLKKLTSLSLNNNNLSGILPDSIGSCVSLTEVNLAENSISGVIPVSIGSLPTLNSLNLSSNEFSGEIPSSLSSLKLSLLDLSDNRFFGSIPDSLAISAFKDGFMGNPGLCSQILKNFKPCSVESVGSRQARNLVFFFIAGLMVLILSLSYFLFMRLKQKTKFEKQVLKTNSWNFKQYHVLNINENEIIEGIKAENVIGKGGSGNVYKVELRSGEVFAVKHIWTSNPRSDYRSSSAMLKRNSCSPEYDAEVATLSSVRHVNVVKLYCSITSEDSSLLVYEFLPNGSLWDRLHTCKKTQMGWEVRYDIALGSARGLEYLHHGCDRPVMHRDVKSSNILLDEEWKPRIADFGLAKIVHGGAGNWTHVIAGTLGYMAPEYAYTCKVTEKSDVYSFGVVLMELVTGKKPVEPEFGENKDIVSWVCSNIRSKESILELVDSTIAKHFKEGAIKVLRIATLCTAKVPSSRPSMRMLVQMLEDADPSSSKVVVTIDS 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08504 1007 SMART LRR_sd22_2 136 159 - -
Vivi1g08504 1007 SMART LRR_sd22_2 257 286 - -
Vivi1g08504 1007 SMART LRR_sd22_2 160 191 - -
Vivi1g08504 1007 SMART LRR_sd22_2 520 541 - -
Vivi1g08504 1007 SMART LRR_sd22_2 305 333 - -
Vivi1g08504 1007 SMART serkin_6 709 998 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g08504 1007 Pfam Leucine rich repeat 498 557 IPR001611 GO:0005515
Vivi1g08504 1007 FunFam Leucine-rich repeat receptor-like protein kinase TDR 325 640 - -
Vivi1g08504 1007 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 658 997 - -
Vivi1g08504 1007 Gene3D Transferase(Phosphotransferase) domain 1 799 1004 - -
Vivi1g08504 1007 FunFam Leucine-rich receptor-like protein kinase family protein 228 324 - -
Vivi1g08504 1007 ProSitePatterns Serine/Threonine protein kinases active-site signature. 843 855 IPR008271 GO:0004672|GO:0006468
Vivi1g08504 1007 SMART LRR_typ_2 448 472 IPR003591 -
Vivi1g08504 1007 SMART LRR_typ_2 328 352 IPR003591 -
Vivi1g08504 1007 SMART LRR_typ_2 257 281 IPR003591 -
Vivi1g08504 1007 SMART LRR_typ_2 568 592 IPR003591 -
Vivi1g08504 1007 SMART LRR_typ_2 520 543 IPR003591 -
Vivi1g08504 1007 Gene3D Phosphorylase Kinase; domain 1 691 798 - -
Vivi1g08504 1007 Gene3D Ribonuclease Inhibitor 225 379 IPR032675 -
Vivi1g08504 1007 Gene3D Ribonuclease Inhibitor 380 639 IPR032675 -
Vivi1g08504 1007 SUPERFAMILY L domain-like 89 399 - -
Vivi1g08504 1007 ProSitePatterns Protein kinases ATP-binding region signature. 715 737 IPR017441 GO:0005524
Vivi1g08504 1007 Pfam Protein kinase domain 712 989 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g08504 1007 Pfam Leucine rich repeat N-terminal domain 70 109 IPR013210 -
Vivi1g08504 1007 Gene3D Ribonuclease Inhibitor 69 224 IPR032675 -
Vivi1g08504 1007 FunFam Receptor-like protein kinase HAIKU2 692 798 - -
Vivi1g08504 1007 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 799 1005 - -
Vivi1g08504 1007 Coils Coil 1007 1007 - -
Vivi1g08504 1007 ProSiteProfiles Protein kinase domain profile. 709 998 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g08504 1007 FunFam Probable inactive receptor kinase RLK902 69 227 - -
Vivi1g08504 1007 SUPERFAMILY Protein kinase-like (PK-like) 701 992 IPR011009 -
Vivi1g08504 1007 CDD STKc_IRAK 715 992 - -
Vivi1g08504 1007 SUPERFAMILY L domain-like 345 609 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08504 Vivi-Chr1 243374754 243378765 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08504 56 996 Receptor kinase-like Gene Family AT1G09970 58.544 0.0 1082
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vivi1g08504 Pkinase 9.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08504 - - gmx:100811489 1373.99