Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08420 ATGGCTGAAGAATTTCAAGCTGGAATTTGTGGTGAAACTTGGTGGAATATTAATAATTCAACAAGAAGTGTTTTTCCTATTATGATGAACTCATCATCTTCATCATGTTCTGGAAGTTATAGTAACTGGCAAAATGAGTTTTTGGGTTTGAAAGATACTAATAGTAATAACTTTGATGTTTCTGATTGTTCTTTGAGTTTTCTCGATTCTCCGAAACCGCCGCAATTATCGGCTAACGGAACCGGTAGTACTAGTAGCATGTTCTTCGATCTCTCATCTCCAAATTCATCGAATTGGAATCAGCCGTTATTGTCAGAGAACAATTTTGAGTCTGTGATTCAAGAAGAAAGCAAAAAGAATTTCTCATCAACAATGGACCAAGAATTTTGCATAGATCATCATCAACAAAATCTGAATTCTATAACAAGCACTGGTTTATCATCATATCCAATTGGATCAGTTGATTCCTATGGTTGTTACCCTTCAAATTTGATACAAAGTTTATTTGATTCTCAACCACAGCCACAAAACTCACTTTTTACCAACCCTTCTTCTATGTCCTATTCATCATCTCCAATGCCAAAGCAACAGCTTAGTGGATTGCACTTTTCAAATAATACTCCTTTCTGGAATGCTTCAGCTGAGGCTCTCAATGATATAAGAGCAGGAGTTTTGGCTTCATCGCAATCGCAATATCAATCTCCGAATTTTCATAACAACAATTTCAGTTCATCAAATACTCTATTAAACAAGCTAAAGAGAGAAAAATCACCAGAAGCAAAAAATTCATCTGAAGTTACAATTAAGAGGCAAAGAATTGAGACTCCATCACCATTACCAACTTTTAAGGTTAGGAAAGAGAAGCTAGGGGACCGTATAACAGCTCTTCAGCAATTGGTTTCACCTTTCGGAAAGACGGATACAGCTTCTGTTCTTCATGAAGCCATTGATTACATCAAGTTTCTTCATGATCAAGTTAATGTTTTGAGTACTCCTTATATGAAAAATGGATCTCCTATTCAACAACAACAGGGTTGTGAAAATGTGAAGGAGTTAGAAAGAAAAAAACAAGATTTAAGAAGTCAAGGGCTTTGTTTGGTGCCAATTTCAAGCACATTTCCAATGACTAATGAGACTAGTGTTGATTTCTGGACACCTACATTTGGAGGTACACTCTTTGGAAGATAG 1188 0.3594 MAEEFQAGICGETWWNINNSTRSVFPIMMNSSSSSCSGSYSNWQNEFLGLKDTNSNNFDVSDCSLSFLDSPKPPQLSANGTGSTSSMFFDLSSPNSSNWNQPLLSENNFESVIQEESKKNFSSTMDQEFCIDHHQQNLNSITSTGLSSYPIGSVDSYGCYPSNLIQSLFDSQPQPQNSLFTNPSSMSYSSSPMPKQQLSGLHFSNNTPFWNASAEALNDIRAGVLASSQSQYQSPNFHNNNFSSSNTLLNKLKREKSPEAKNSSEVTIKRQRIETPSPLPTFKVRKEKLGDRITALQQLVSPFGKTDTASVLHEAIDYIKFLHDQVNVLSTPYMKNGSPIQQQQGCENVKELERKKQDLRSQGLCLVPISSTFPMTNETSVDFWTPTFGGTLFGR 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08420 395 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 273 322 IPR011598 GO:0046983
Vivi1g08420 395 MobiDBLite consensus disorder prediction 174 193 - -
Vivi1g08420 395 FunFam Transcription factor bHLH123 family 283 345 - -
Vivi1g08420 395 Gene3D - 283 347 IPR036638 GO:0046983
Vivi1g08420 395 Coils Coil 342 362 - -
Vivi1g08420 395 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 105 374 - -
Vivi1g08420 395 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 283 340 IPR036638 GO:0046983
Vivi1g08420 395 CDD bHLH_AtbHLH_like 279 330 IPR045239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08420 Vivi-Chr1 241089831 241093130 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08420 1 393 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G61660 40.095 6.65e-62 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08420 - - vvo:131624453 775.778