Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08411 ATGCGACGAGGTTTCTTCTTCTTCTTGTTCATCACTTCACTTTCTTTTCCCACCTTAATCTCAACTTCTACATTCATAGACACCTTATCTTCATCAAAAATTCTCAGAACAAATCAGACCCTTGAATCTCTTCAAGGATCATTCGTTCTTGGTTTCATCTCAGGAACATATTCCAACATTTATTTAGCCATATGGTACAAAAACATCCCAGACACTGTTGTTTGGGTCGCTAACAGAGACAATCCTCTTCAAAATTCAACCAACAGCTTCCTCAAAATCACTGACGATGGAAACATAGTACTTCTCAATTCATCATCAGACTCAAACAACCTCGTTTGGTCTTCAAATTCTTCGAATCAAACAAATGCTAAAAACCAAGTTCTTGTTCTTCAGCTTTTAGATACTGGAAATTTAGTACTCAGAGAAACAAACGTGAATGATCCAACTAAATATCTATGGCAAAGCTTTGATTATCCGACAGATACCATGTTACCAACCATGATCATGGGTTGGAACTTCGACAAAAAAACTGAAAAACACTTAACTTCATGGAAGATCACAGGTCAAGATCCTTCAACAGGAGATTATTCATACAGAATAAATTTTCATGGTTTACCAGATGTTTTCCTGCGGAATGATGATACAATAATATATCGAAGTGGACCTTGGAATGGTGAAAGATTCAGCGGTGTACCAGAGATGCAACTTGTCACAGATTCAATAGTTTTCAGTTTCTCATGGAACGAACACGGTGTGAACTACTCGTATTCGATTGGAAACAAGTCCATTTTTTCGAGACTCGTGGTGAATTCTGATGGTCATGCTCAACGTCTAACTTGGGTTCAGAGTAGCAAAACATGGACAACGTTTTGGTATTCGCCGAAAGATCAATGTGATAATTACAAAGAATGTGGTCCTTACGGTGTATGTGATTCCACGGCTTCGCCGGTTTGTGAATGCATGAAAGGCTTCAGTCCTAAGAATGAACAAGCTTGGAAATTGAGAGATGGATCTGATGGGTGTGTGAGGGATAAGGATTTGGATTGCGAGAGCGATAAATTTTATCGTATGGAGAATGTGAAGTTGCCTGAGACAACCTCAGTGTTTGTGAACACGACAATGGAGATCGATGAATGCGGGAAATTGTGTCATGGGAATTGTTCTTGTACAGCTTATGCTAATGTTTATGTAACTAATGGAGGAAGTGGTTGTGTTATGTGGTTTGGAGAACTCAATGATATAAGAAATTTTTCTGATGGTGGACAGGATATTTTTGTTAGATTAGCAGCTTCTGAACTACTTGATAACTCAAGTTCTAGTGGTGGCTCTCACAAGAAAAACCCTAAAGTTGAGATTATAGGAATCACAATTTCTGTTGCTGCTGTTATAGTTTTGGGATTGTGTATTCTTTTATATAAGAAGAGGAAATTGCTTAGTCATAGAAATACAGACAACATGGATGAACTAGACTTGCCGATGTTTGATTTTAATTCCATAACAATAGCTACAAATAACTTCTTGGAAGCAAATAAACTTGGACATGGAGGCTTTGGTAGTGTCTATAAGGGAATGTTGGCTGAAGGGCAAGAAATAGCTGTCAAGAGGTTATCAGAAACTTCAGGGCAAGGAAATGAAGAATTTAAGAATGAGATCAAGTTAATTGCCAAGCTTCAACATCGAAACCTTGTTAGGCTTTTAGGTTGTTGCATTGACAAGGATGAGAAGCTTCTTGTGTATGAGTATATGGAAAATAGAAGCCTTGATTCGATTTTGTTTGACAAAGCTAGAAAACCCTTACTAGATTGGAAAAAACGATTCTACATTATATGTGGAATTGCTAGAGGGCTCCTTTATCTACATCATGATTCAAGGTTGAGAATTATCCATAGGGATCTCAAGGCAAGCAACATTCTACTCGATGGCGAAATGAATCCAAAAATATCAGACTTTGGAATGGCTAGAATATTTGCCCATGATCAAATAGAGGCAAAAACATCGCGTGTAGTCGGAACATATGGTTATATGTCTCCTGAATATGCTATGGACGGAAACTTCTCAGTGAAATCCGATGTTTTTAGCTTTGGAGTTATTGTGCTAGAGATCATAAGTGGAAAGAAAAATAGAGGATTCTGCTACACAAACGAGGATATGAATCTTCTAAAGAATGCATGGGGACAATGGAGAGAAGGAAATGCAATAGAACTGATTGATTCGTCGATTGGTGATTCATATACAGAATCTGAAGTTCTTAGATGCATACATGTTGGGCTATTGTGTGTCCAAGAACGCGCCGAAGATAGGCCAACAATGCCTTTAGTGCTTTTGATGCTTGGAAGTGATGATGCACTAAAGCCAGAACCTAGAAGTCCGGGGTTTTCTCTTGGAAGATCAAATAATCCTCCAGAGACTGATTCGTCTTCAAGTAAGCAAGATGAATCATGGAGTGTGAACAAAGTCACAGTCACATTGCTTGATGCTAGGTAG 2484 0.3833 MRRGFFFFLFITSLSFPTLISTSTFIDTLSSSKILRTNQTLESLQGSFVLGFISGTYSNIYLAIWYKNIPDTVVWVANRDNPLQNSTNSFLKITDDGNIVLLNSSSDSNNLVWSSNSSNQTNAKNQVLVLQLLDTGNLVLRETNVNDPTKYLWQSFDYPTDTMLPTMIMGWNFDKKTEKHLTSWKITGQDPSTGDYSYRINFHGLPDVFLRNDDTIIYRSGPWNGERFSGVPEMQLVTDSIVFSFSWNEHGVNYSYSIGNKSIFSRLVVNSDGHAQRLTWVQSSKTWTTFWYSPKDQCDNYKECGPYGVCDSTASPVCECMKGFSPKNEQAWKLRDGSDGCVRDKDLDCESDKFYRMENVKLPETTSVFVNTTMEIDECGKLCHGNCSCTAYANVYVTNGGSGCVMWFGELNDIRNFSDGGQDIFVRLAASELLDNSSSSGGSHKKNPKVEIIGITISVAAVIVLGLCILLYKKRKLLSHRNTDNMDELDLPMFDFNSITIATNNFLEANKLGHGGFGSVYKGMLAEGQEIAVKRLSETSGQGNEEFKNEIKLIAKLQHRNLVRLLGCCIDKDEKLLVYEYMENRSLDSILFDKARKPLLDWKKRFYIICGIARGLLYLHHDSRLRIIHRDLKASNILLDGEMNPKISDFGMARIFAHDQIEAKTSRVVGTYGYMSPEYAMDGNFSVKSDVFSFGVIVLEIISGKKNRGFCYTNEDMNLLKNAWGQWREGNAIELIDSSIGDSYTESEVLRCIHVGLLCVQERAEDRPTMPLVLLMLGSDDALKPEPRSPGFSLGRSNNPPETDSSSSKQDESWSVNKVTVTLLDAR 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08411 827 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 6 768 - -
Vivi1g08411 827 Gene3D Transferase(Phosphotransferase) domain 1 582 785 - -
Vivi1g08411 827 Pfam Domain of unknown function (DUF3403) 785 827 IPR021820 GO:0004674
Vivi1g08411 827 ProSiteProfiles Bulb-type lectin domain profile. 26 153 IPR001480 -
Vivi1g08411 827 CDD STKc_IRAK 512 777 - -
Vivi1g08411 827 SUPERFAMILY Protein kinase-like (PK-like) 489 777 IPR011009 -
Vivi1g08411 827 ProSitePatterns Protein kinases ATP-binding region signature. 512 534 IPR017441 GO:0005524
Vivi1g08411 827 Gene3D Phosphorylase Kinase; domain 1 470 581 - -
Vivi1g08411 827 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 582 785 - -
Vivi1g08411 827 PIRSF SRK 2 827 IPR024171 GO:0004674
Vivi1g08411 827 MobiDBLite consensus disorder prediction 792 815 - -
Vivi1g08411 827 SMART blect_4 32 159 IPR001480 -
Vivi1g08411 827 Pfam PAN-like domain 349 414 IPR003609 -
Vivi1g08411 827 Pfam D-mannose binding lectin 72 185 IPR001480 -
Vivi1g08411 827 SMART serkin_6 506 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g08411 827 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 471 581 - -
Vivi1g08411 827 CDD PAN_AP_plant 346 429 - -
Vivi1g08411 827 ProSitePatterns Serine/Threonine protein kinases active-site signature. 627 639 IPR008271 GO:0004672|GO:0006468
Vivi1g08411 827 ProSiteProfiles PAN/Apple domain profile. 349 429 IPR003609 -
Vivi1g08411 827 MobiDBLite consensus disorder prediction 784 815 - -
Vivi1g08411 827 SUPERFAMILY alpha-D-mannose-specific plant lectins 62 225 IPR036426 -
Vivi1g08411 827 Pfam S-locus glycoprotein domain 218 328 IPR000858 GO:0048544
Vivi1g08411 827 CDD B_lectin 32 159 IPR001480 -
Vivi1g08411 827 ProSiteProfiles Protein kinase domain profile. 506 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g08411 827 Gene3D - 21 156 IPR036426 -
Vivi1g08411 827 Pfam Protein tyrosine and serine/threonine kinase 510 724 IPR001245 GO:0004672|GO:0006468
Vivi1g08411 827 SMART ntp_6 349 428 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08411 Vivi-Chr1 240716476 240719819 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08411 462 827 Receptor kinase-like Gene Family AT4G23150 53.209 7.27e-131 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi1g08411 PK_Tyr_Ser-Thr 7.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08411 - - gmx:100797331 1124