Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08404 ATGTGGGAAATACAGGGTAGGCTAGTTGATGGCCAGGAAATTGCGGTAAAGAGGTTGTCAACAAGCTCTGGACAAGGAAATGTAGAATTCATGAACGAGGTAAGATCGATCGCAAAGCTTCAACATCGAAATCTCGTACGTCTCTTTGGTTGCTGCATTGAGAAAGAGGAGAAGATGCTGATCTATGAGTACTTGGAAAATAACAGCGTAGACTCTATTTTATTTGACCAAGCAAAGAATTCCAAGCTAGATTGGCCAATGAGATTCAATATCATATGTGGAATCGCCAAAGGGTTACTTTATCTTCACCATGACTCAAGATTTAGAATTATCCATAGAGATCTCAAGGCAAGCAATGTTCTACTTGATAGAGATATGAATCCAAAGATATCGGATTTCGGAACTGCTAGAATTTTCGACAATGATCAAACACACTCTAATACAAAGAGAGTTGTTGGAACATATGGCTATATGTCTCCTGAATATGCAATGGGTGGATACTTTTCGGTGAAATCAGATGTTTTTAGTTTCGGAGTTCTCGTGTTGGAGATCATAAGCGGCATGAAGAATAGAGGATTTCATTTCTCCGATGACCTAAATCTCCTTGGACTTGCATGGAGGCTATGGAACGAAGGAAAAGCGTTGGAGCTAATAGATTCGTCTTATGCAGATTCGTATTCAGAATCTGAAGTTATAAGATGCATAAATGTAGGCCTAATATGTGTCCAAGAGAAAATAGAAGACAGGCCTACAATGCCTTCAGTGGTGATGATGTTGAATAGCGAAACAACAACGCTGCCAAATCCGAAGCATCCCGGATTCGTCCTTGGAAGAAATCCAGGTGAATCCAATTCATCTTCGGCTAGGCAAGAAGAATCACACTCAATAAACCAAGTCACAGTTACAATAGTAAATGGCAGATAG 924 0.4004 MWEIQGRLVDGQEIAVKRLSTSSGQGNVEFMNEVRSIAKLQHRNLVRLFGCCIEKEEKMLIYEYLENNSVDSILFDQAKNSKLDWPMRFNIICGIAKGLLYLHHDSRFRIIHRDLKASNVLLDRDMNPKISDFGTARIFDNDQTHSNTKRVVGTYGYMSPEYAMGGYFSVKSDVFSFGVLVLEIISGMKNRGFHFSDDLNLLGLAWRLWNEGKALELIDSSYADSYSESEVIRCINVGLICVQEKIEDRPTMPSVVMMLNSETTTLPNPKHPGFVLGRNPGESNSSSARQEESHSINQVTVTIVNGR 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08404 307 Pfam Protein tyrosine and serine/threonine kinase 11 258 IPR001245 GO:0004672|GO:0006468
Vivi1g08404 307 SMART serkin_6 2 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g08404 307 FunFam Uncharacterized protein 1 64 - -
Vivi1g08404 307 MobiDBLite consensus disorder prediction 279 299 - -
Vivi1g08404 307 ProSitePatterns Serine/Threonine protein kinases active-site signature. 110 122 IPR008271 GO:0004672|GO:0006468
Vivi1g08404 307 ProSiteProfiles Protein kinase domain profile. 1 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g08404 307 Gene3D Phosphorylase Kinase; domain 1 3 64 - -
Vivi1g08404 307 SUPERFAMILY Protein kinase-like (PK-like) 8 279 IPR011009 -
Vivi1g08404 307 MobiDBLite consensus disorder prediction 276 299 - -
Vivi1g08404 307 Pfam Domain of unknown function (DUF3403) 261 307 IPR021820 GO:0004674
Vivi1g08404 307 PIRSF ILK 8 271 - -
Vivi1g08404 307 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 65 267 - -
Vivi1g08404 307 Gene3D Transferase(Phosphotransferase) domain 1 65 269 - -
Vivi1g08404 307 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 5 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08404 Vivi-Chr1 240472977 240474526 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08404 5 302 Receptor kinase-like Gene Family AT4G11530 58.224 3.93e-122 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi1g08404 PK_Tyr_Ser-Thr 4.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08404 - - aip:107621503 464.922