Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08403 ATGCGAGGATGTTTCTTCTCCTCCTTCCTCTTCTTCTTGTTCATCACAATTTCAACTTCTACAGCCACAGACACGTTAACCTCATCACAAATTCTCAGAACAAATCAGACCCTTGAATCTCTTCAAGGATCATTCGTTCTTGGTTTCATCTCAGGGACATCTTCCAACATTTATTTAGCCATATGGTACAAAAACATCCCTGACACTGTTGTTTGGGTCGCTAACAGAGACAACCCTCTTCAAAATTCAACCGACACCTTCCTTAAAATCGCTGACGATGGAAACATAGTACTTCTGAACTCATCGACAGACTCAAACAACCTCGTTTGGTCTTCTTCGAATCAAACAAATGCGAAAAACCAAGTTCTTGTTCTTCAGCTTTTAGATACTGGAAATTTAGTACTCAGAGAAACAAACGTGAATGATCCAACTAAATATCTATGGCAAAGCTTCGATCACCCGACAGATACTTTGTTACCGAACATGACCATGGGTTGGAACTTCGACAAGAAAACTGAAAAGCACTTGACATCATGGAAGAACACAGGTGAAGATCCTTCGTCAGGTGATTATTCATTCAAGATTGACTTTCATGGTTTACCAGAAGTTTTCCTGCGGAATGATGATACTATAATATACCGGAGTGGACCGTGGAATGGTGAAAGATTCAGCGGTGTACCGGAGATGGAACCGGACACAGATTCGATAGTATTCAGTTTCTCATCGAACGAACACGGTGTGAACTACTCGTTTTCGATTGGGAATAAGTCGATTTTTTCGAGACTTGTAGTGACTTCTGATGGTCAACTTCAACGTCTAACTTGGGTTCAGAGTAGCAAAACATGGACAAAGTTTTGGTACGCGCCGAAAGATCAATGTGATGATTACAAAGAATGTGGCCCTTATGGTGTGTGTGATTCCAACGCTTCGCCGGTTTGTGAATGCATGAAAGGGTTTAGTCCTAAGAATGAACAAGCATGGAAATTGAGAGATGGATCTGATGGGTGTGTGAGGGATAAGGATTTGAATTGTACAAGTGATAAATTTTATCATATGGAGAATGTGAAGTTGCCTGATACAACATCAGTGTTTGTGAACACGACAATGGAGATCGATGAATGCGGTAAATTGTGTCATAGGAATTGTTCTTGTACTGGTTATGCTAATATTTATATAAGCAATGGAGGAAGTGGCTGTGTGATGTGGTTTGATGAACTTAATGATATTAGAAGTTATCCTGATGGTGGACAAGATCTTTTTGTTAGATTAGCAGCTTCTGAACTAGATAACTCAGGATCTACTAAGAAAAGTCATAAAGCTGAGATTATAGGAATCACAATTTCTGCAGCTGTTTTGGTTTTGGGATTGTGTATCCTTTTATGTAAGAAGAGGAAATTGTTAAGATATGGAAAGACAGACAATAGCAGAGGTTCTATCCAAAGAAGCAGAGAATTGTTGATGAATGAGATGGTTTTTTCAAGTCATAGAGAAGCCTCAGGAGAAAGGAACATGGATGAACTAGACTTGCCAATGTTTGATTTTAATACCATAATAATAGCTACAAATAACTTCTTGGAAGAAAACAAACTTGGACATGGAGGCTTTGGAAGTGTTTATAAGGGAAGGTTGATTGAAGGTCAAGAAATTGCTGTCAAGAGGCTATCGAAAACTTCGGGGCAAGGAAATGAGGAGTTTAAGAATGAGGTCAAGTTAATTGCCAAGCTTCAACATCGAAACCTTGTTCGGCTTTTAGGTTGCTGCATTGATCAGGATGAGAAGCTTCTTGTGTATGAGTATATGAAAAATAGAAGTCTTGATTCCATTTTGTTTGACAAAGCTAGAAAATCCTTGTTGGACTGGAAAAAGCGATTCGACATTATATGCGGAATCGCTAGAGGGCTTCTTTATCTGCATCATGATTCAAGACTCCGGATTATCCATAGGGATCTCAAGGCAAGCAATATTTTACTCGACGGCGATATGAATCCAAAAATATCAGATTTTGGAATGGCTAGAATATTTGGCCATGATCAAACAGAAGCAAATACATTGCGAGTCGTCGGGACATATGGTTATATGTCTCCTGAATATGCTATGGACGGAAACTTCTCAGTCAAATCAGATGTTTTTAGCTTTGGAGTTCTTGTGCTAGAGATCATAAGTGGAAAGAAAAATAGAGGATTCTACTACGCAAACGATGATATGAATCTTCTAAAGAATGCATGGGGACAGTGGAGAGAAGGAAAAGCATTAGAACTCATTGATTCGTCGATTGGCGATTCATATACAGAATCAGAAGTTCTTAGATGCATACATGTTGGACTATTGTGCGTTCAAGAACGCGCCGAAGATAGGCCAACAATGCCTTCAGTGCTCTTGATGCTTGGAAGTGAAACTGCACTAATGCCAGAACCTAGAAGTCCAGGATTTTCCCTCGGAAGATCAAAGAATCCTCCGGAAACCGATTCATCTTCGAGTAAACAAGACGAAACATGGAGTGTGAACCAAGTCACAGTCACATTGCTTGATGCTAGGTAG 2538 0.3964 MRGCFFSSFLFFLFITISTSTATDTLTSSQILRTNQTLESLQGSFVLGFISGTSSNIYLAIWYKNIPDTVVWVANRDNPLQNSTDTFLKIADDGNIVLLNSSTDSNNLVWSSSNQTNAKNQVLVLQLLDTGNLVLRETNVNDPTKYLWQSFDHPTDTLLPNMTMGWNFDKKTEKHLTSWKNTGEDPSSGDYSFKIDFHGLPEVFLRNDDTIIYRSGPWNGERFSGVPEMEPDTDSIVFSFSSNEHGVNYSFSIGNKSIFSRLVVTSDGQLQRLTWVQSSKTWTKFWYAPKDQCDDYKECGPYGVCDSNASPVCECMKGFSPKNEQAWKLRDGSDGCVRDKDLNCTSDKFYHMENVKLPDTTSVFVNTTMEIDECGKLCHRNCSCTGYANIYISNGGSGCVMWFDELNDIRSYPDGGQDLFVRLAASELDNSGSTKKSHKAEIIGITISAAVLVLGLCILLCKKRKLLRYGKTDNSRGSIQRSRELLMNEMVFSSHREASGERNMDELDLPMFDFNTIIIATNNFLEENKLGHGGFGSVYKGRLIEGQEIAVKRLSKTSGQGNEEFKNEVKLIAKLQHRNLVRLLGCCIDQDEKLLVYEYMKNRSLDSILFDKARKSLLDWKKRFDIICGIARGLLYLHHDSRLRIIHRDLKASNILLDGDMNPKISDFGMARIFGHDQTEANTLRVVGTYGYMSPEYAMDGNFSVKSDVFSFGVLVLEIISGKKNRGFYYANDDMNLLKNAWGQWREGKALELIDSSIGDSYTESEVLRCIHVGLLCVQERAEDRPTMPSVLLMLGSETALMPEPRSPGFSLGRSKNPPETDSSSSKQDETWSVNQVTVTLLDAR 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08403 845 Pfam Protein tyrosine and serine/threonine kinase 527 791 IPR001245 GO:0004672|GO:0006468
Vivi1g08403 845 Gene3D Phosphorylase Kinase; domain 1 487 599 - -
Vivi1g08403 845 ProSiteProfiles PAN/Apple domain profile. 344 424 IPR003609 -
Vivi1g08403 845 MobiDBLite consensus disorder prediction 814 834 - -
Vivi1g08403 845 Pfam PAN-like domain 344 409 IPR003609 -
Vivi1g08403 845 Gene3D - 18 152 IPR036426 -
Vivi1g08403 845 Pfam Domain of unknown function (DUF3403) 797 845 IPR021820 GO:0004674
Vivi1g08403 845 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 488 599 - -
Vivi1g08403 845 SUPERFAMILY Protein kinase-like (PK-like) 509 811 IPR011009 -
Vivi1g08403 845 SMART blect_4 29 154 IPR001480 -
Vivi1g08403 845 CDD PAN_AP_plant 341 424 - -
Vivi1g08403 845 ProSiteProfiles Protein kinase domain profile. 524 801 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g08403 845 SMART ntp_6 344 423 IPR003609 -
Vivi1g08403 845 CDD B_lectin 29 154 IPR001480 -
Vivi1g08403 845 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 9 786 - -
Vivi1g08403 845 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 600 803 - -
Vivi1g08403 845 ProSiteProfiles Bulb-type lectin domain profile. 23 148 IPR001480 -
Vivi1g08403 845 Pfam Receptor serine/threonine kinase 480 514 IPR022126 GO:0004674
Vivi1g08403 845 PIRSF SRK 1 845 IPR024171 GO:0004674
Vivi1g08403 845 SUPERFAMILY alpha-D-mannose-specific plant lectins 59 220 IPR036426 -
Vivi1g08403 845 MobiDBLite consensus disorder prediction 802 834 - -
Vivi1g08403 845 ProSitePatterns Serine/Threonine protein kinases active-site signature. 645 657 IPR008271 GO:0004672|GO:0006468
Vivi1g08403 845 Pfam S-locus glycoprotein domain 213 323 IPR000858 GO:0048544
Vivi1g08403 845 SMART serkin_6 524 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1g08403 845 Gene3D Transferase(Phosphotransferase) domain 1 600 802 - -
Vivi1g08403 845 Pfam D-mannose binding lectin 69 180 IPR001480 -
Vivi1g08403 845 CDD STKc_IRAK 530 795 - -
Vivi1g08403 845 ProSitePatterns Protein kinases ATP-binding region signature. 530 552 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08403 Vivi-Chr1 240468706 240473665 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08403 512 812 Receptor kinase-like Gene Family AT4G11530 64.570 4.21e-136 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi1g08403 PK_Tyr_Ser-Thr 4.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08403 - - gmx:100797331 1229.54