Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g08395 ATGATGAAGAAAAAATGTGAACTCTGCAAAAGTCCAGCAAAGTTGTTCTGTGAATCAGATCAAGCAAGTCTTTGTTGGGAATGTGATACTAGGGTTCACACTGCAAATTTCATAGTCACAAAACATCAAAGGTTTCTTCTTTGTCATATTTGTCAATCCTTAACTGCTTGGCATGGAACTGGACCCAAGTTTGTTCCAACCATGTCTCTTTGTGACTATTGTGTTTCTCTTACCAACAATAACAATGATCATCGAGACGACGACAACGACGACAACGATGACGACGACGACGACGAAGATACCGATGAAGATGATGATGATGAAGAAAATCAAGTTGTTCCATGGAAATCTACACCTCCTCCACCAGTTTCTTCTTGTTCTTCAAATAGTGCAACTACATATTAA 405 0.3901 MMKKKCELCKSPAKLFCESDQASLCWECDTRVHTANFIVTKHQRFLLCHICQSLTAWHGTGPKFVPTMSLCDYCVSLTNNNNDHRDDDNDDNDDDDDDEDTDEDDDDEENQVVPWKSTPPPPVSSCSSNSATTY 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g08395 134 SMART bboxneu5 1 47 IPR000315 GO:0008270
Vivi1g08395 134 CDD Bbox1_BBX-like 5 47 - -
Vivi1g08395 134 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Vivi1g08395 134 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 5 130 - -
Vivi1g08395 134 Pfam B-box zinc finger 4 43 IPR000315 GO:0008270
Vivi1g08395 134 MobiDBLite consensus disorder prediction 79 134 - -
Vivi1g08395 134 MobiDBLite consensus disorder prediction 87 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g08395 Vivi-Chr1 240225842 240226507 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g08395 2 106 C2C2-CO-like Transcription Factor Family AT4G27310 46.667 7.56e-33 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi1g08395 zf-B_box 1.7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g08395 - - cam:101492786 170.244